Report for Sequence Feature Glyma08g09670
Feature Type: gene_model
Chromosome: Gm08
Start: 6872870
stop: 6875488
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g09670
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G17330 AT
Annotation by Michelle Graham. TAIR10: glutamate decarboxylase | chr5:5711141-5714839 FORWARD LENGTH=502
SoyBase E_val: 0 ISS
GO:0000041 GO-bp
Annotation by Michelle Graham. GO Biological Process: transition metal ion transport
SoyBase N/A ISS
GO:0006536 GO-bp
Annotation by Michelle Graham. GO Biological Process: glutamate metabolic process
SoyBase N/A ISS
GO:0010167 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to nitrate
SoyBase N/A ISS
GO:0010359 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity
SoyBase N/A ISS
GO:0015706 GO-bp
Annotation by Michelle Graham. GO Biological Process: nitrate transport
SoyBase N/A ISS
GO:0019752 GO-bp
Annotation by Michelle Graham. GO Biological Process: carboxylic acid metabolic process
SoyBase N/A ISS
GO:0046686 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cadmium ion
SoyBase N/A ISS
GO:0048767 GO-bp
Annotation by Michelle Graham. GO Biological Process: root hair elongation
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004351 GO-mf
Annotation by Michelle Graham. GO Molecular Function: glutamate decarboxylase activity
SoyBase N/A ISS
GO:0005516 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calmodulin binding
SoyBase N/A ISS
GO:0016831 GO-mf
Annotation by Michelle Graham. GO Molecular Function: carboxy-lyase activity
SoyBase N/A ISS
GO:0030170 GO-mf
Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding
SoyBase N/A ISS
KOG1383
KOG
Glutamate decarboxylase/sphingosine phosphate lyase
JGI ISS
PTHR11999 Panther
GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE
JGI ISS
PTHR11999:SF1 Panther
SEX HORMONE-BINDING GLOBULIN
JGI ISS
PF00282 PFAM
Pyridoxal-dependent decarboxylase conserved domain
JGI ISS
UniRef100_B9SR96 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Glutamate decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9SR96_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1KRN4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRN4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g09670
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g09670
Paralog Evidence Comments
Glyma05g26660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g09670 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g091500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g09670
Coding sequences of Glyma08g09670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g09670.1 sequence type=CDS gene model=Glyma08g09670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTTTTCCAAAACCCTCTTCTGAGTCTGACCTCTTTCTTTGTTCCAACTTTGCTTCTCGCTATGCCAGGGACTCTCTTCCCAGGTTCAGCATGCCAGAGAACTCCATGCCTAAGGAGGCTGCGTACCAAAACATTCACGATGAGTTGCAGCTTGATGCAATTCCAAAGCTGAACTTGGCTTCTTTTGTGACCACTTCCATGGAAGAAGAGTGCAACAAACTCATCATGGAATCCATCAACAAGAACTATGTTGACATGGACGAGTATCCTGCCACCACTGACCTTCACAATCGATGTGTGAACATGATAGCACGTATGTTCCATGCTGAGATCGGAGAAAATGAGAATGCAACTGGAGCAGGAACAGTTGGATCATCAGAGGCCATAATGCTGGCAGGGCTTGCATTCAAGAAGAAGTGGCAGAACAAGCGCAAGGCAGAGGGAAAGCCTTATGATAAGCCAAATTTGGTGACTGGTTCCAATGTGCAAGTATGTTGGGAGAAATTTGCAAGGTATTTTGAGGTGGAGTTGAGGGAAGTGGAGGTCAGAGAAGGCTATTATGTCATGGACCCTGCCAAAGCCGTTGAACTTGTTGATGAGAACACTATTTGTGTGGCTGCAATCTTGGGTTCAACTTACAATGGAGAGTTCGAAGATGTCAAGCTTTTAAATGACCTGTTGCTAGAAAAAAACAAGCAAACTGGATGGGATACGCCTATTCACGTGGATGCTGCAAGTGGTGGGTTTATTGCTCCATTCCTATATCCAGAGCTAGAATGGGATTTCAGACTCCCATTGGTGAAGAGCATAAATGTTAGTGGCCACAAGTATGGGCTTGTTTATGCTGGCATTGGTTGGGTTATTTGGAGGACCAAGGATGACTTGCCAGAAGACCTTGTCTTCCATATTAACTACCTTGGAGCTGACCAACCCACCTTCACCCTCAATTTCTCTAAAGGTTCTAGTCAGATCATTGCTCAATATTATCAGCTAATTCGCCTTGGCCATGAGGGATACCGTAGCATAATGGAGAACTGCAGAGACAATGCAATGGTGCTGAAGGAAAGTTTGGAGAAGAGTGGACACTTTAACATACTCTCAAAAGACAATGGTGTTCCTGTTGTGGCATTTTCTCTAAAGGACAGAAGCCAGTACGATGAGTACAAGATATCAGAGATGTTGCGTCGCCACGGTTGGATTGTGCCGGCATATCCAATGCCACCAGCTGCTCAACACATCAATGTGCTCCGTGTGGTCATCAGGGCTGAGTTTTCACGCACCCTTGCTGAACGCCTTGTGTTTGACATATACAATGTGCTGCATGAACTTGAAAAGCTACATCCCCCCAAAGTGACCAACTTCATTAAGGAAGAAAACAAGGCCTTGGTTGAAACTGGTGTCAAGAAAACTGCATTGGATGCACATAGGGAAATCATTGCTCAAGAATCAAACAAGCGTCAGAAAATTATGGCTGCCTAA
Predicted protein sequences of Glyma08g09670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g09670.1 sequence type=predicted peptide gene model=Glyma08g09670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVFPKPSSESDLFLCSNFASRYARDSLPRFSMPENSMPKEAAYQNIHDELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPATTDLHNRCVNMIARMFHAEIGENENATGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPAKAVELVDENTICVAAILGSTYNGEFEDVKLLNDLLLEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKDDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGHEGYRSIMENCRDNAMVLKESLEKSGHFNILSKDNGVPVVAFSLKDRSQYDEYKISEMLRRHGWIVPAYPMPPAAQHINVLRVVIRAEFSRTLAERLVFDIYNVLHELEKLHPPKVTNFIKEENKALVETGVKKTALDAHREIIAQESNKRQKIMAA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
