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Report for Sequence Feature Glyma08g09660

Feature Type:gene_model
Chromosome:Gm08
Start:6864266
stop:6866809
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g09660
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G17330AT Annotation by Michelle Graham. TAIR10: glutamate decarboxylase | chr5:5711141-5714839 FORWARD LENGTH=502 SoyBaseE_val: 0ISS
GO:0000041GO-bp Annotation by Michelle Graham. GO Biological Process: transition metal ion transport SoyBaseN/AISS
GO:0006536GO-bp Annotation by Michelle Graham. GO Biological Process: glutamate metabolic process SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0010359GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0019752GO-bp Annotation by Michelle Graham. GO Biological Process: carboxylic acid metabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004351GO-mf Annotation by Michelle Graham. GO Molecular Function: glutamate decarboxylase activity SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
GO:0016831GO-mf Annotation by Michelle Graham. GO Molecular Function: carboxy-lyase activity SoyBaseN/AISS
GO:0030170GO-mf Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding SoyBaseN/AISS
KOG1383 KOG Glutamate decarboxylase/sphingosine phosphate lyase JGI ISS
PTHR11999Panther GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE JGI ISS
PTHR11999:SF1Panther SEX HORMONE-BINDING GLOBULIN JGI ISS
PF00282PFAM Pyridoxal-dependent decarboxylase conserved domain JGI ISS
UniRef100_B9SR96UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glutamate decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9SR96_RICCO SoyBaseE_val: 0ISS
UniRef100_I1KRN3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRN3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g09660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g09660 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g091400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g09660
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g09660
>Glyma08g09660.1   sequence type=CDS   gene model=Glyma08g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTTCCAAAACCCGCTTCTGAGTCTGATCTCTTTCTTCATTCCAACTTTGCTTCTCGTTATGCCAGGGACTCTCTTCCCAGGTTCAGCATACCCGAGGACTCCATGCCAAAGGAGGCTGCGTATCAGAACATACACGATGAGTTGCAGCTTGATGCAATTCCAAAGCTGAACTTGGCTTCCTTTGTGACAACTTCCATGGAAGAAGAGTGCAACAAGCTCATCATGGAATCGATAAACAAGAACTATGTCGACATGGACGAATATCCTATCACCACTGACCTTCACAATCGGTGCGTGAACATGATAGCACGTTTATTCCATGCTGAAATTGGAGAAAATGAGATTGCAACTGGAGCAGGAACCGTTGGATCATCTGAGGCCATAATGCTGGCAGGGCTTGCATTCAAGAAGAAGTGGCAGAACAAGCGCAAGGAAGAGGGAAAGCCTTATGATAAGCCAAATTTGGTGACTGGTTCCAACGTGCAGGTATGTTGGGAGAAATTTGCGAGGTATTTTGAAGTGGAGTTGAGAGAAGTGGAGGTGAGGGAAGGCTACTATGTGATGGACCCTGCCAAAGCAGTTGAAATGGTTGATGAGAACACTATTTGTGTGGCTGCAATCTTGGGTTCAACTTACAATGGAGAGTTCGAAGATGTCAAGCTCCTAAATGACCTATTGCTAGAAAAAAACAAGCAAACTGGATGGGATACACCTATTCATGTGGATGCTGCAAGTGGTGGCTTTATTGCTCCATTCCTTTATCCAGAGTTAGAATGGGATTTTAGACTCCCATTGGTGAAGAGCATAAATGTTAGTGGCCACAAGTATGGGCTTGTTTATGCTGGCATTGGTTGGGTTATTTGGAGGACCAAGGATGACTTACCAGAAGACCTTGTCTTCCATATTAATTACCTTGGAGCTGACCAACCCACCTTCACCCTCAATTTCTCTAAAGGTTCTAGCCAGATCATTGCTCAATATTATCAGCTAATTCGTCTTGGCCAAGAGGGGTACCGAAGCATAATGGAGAACTGCAGAGAAAATGCAATGGTGCTGAAGGAAGATTTGGAGAAAAGTGGTCACTTTAACATTCTCTCAAAAGACGATGGTGTTCCTGTGGTGGCATTTTCTCTCAAAGACAGAAGCCGGTACGATGAGTTCAAGATATCAGAGATGTTGCGCCGCCACGGTTGGATCGTGCCGGCGTATCCAATGCCACCTGCTGCTCAACACATCAATGTGCTCCGTGTGGTCATCAGGGCTGAGTTTTCACGCACCCTTGCTGAACGCCTTGCGTTTGACATACACAATGTGATGGATGAACTTGAAAAGTTGCATCCCCCCATAGTGACCAAAAACACAAAGGAAGAGAACAAGGCCATGGTTGAAAATGGGGTGAAGAACACTGCATTGGATGCACACAGGGAAATCATTGCTCAAGAATCCAACAAGCGTCAGAAAATCATGGCAGCTTAG
Predicted protein sequences of Glyma08g09660
>Glyma08g09660.1   sequence type=predicted peptide   gene model=Glyma08g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFPKPASESDLFLHSNFASRYARDSLPRFSIPEDSMPKEAAYQNIHDELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPITTDLHNRCVNMIARLFHAEIGENEIATGAGTVGSSEAIMLAGLAFKKKWQNKRKEEGKPYDKPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPAKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLLEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKDDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYRSIMENCRENAMVLKEDLEKSGHFNILSKDDGVPVVAFSLKDRSRYDEFKISEMLRRHGWIVPAYPMPPAAQHINVLRVVIRAEFSRTLAERLAFDIHNVMDELEKLHPPIVTKNTKEENKAMVENGVKNTALDAHREIIAQESNKRQKIMAA*






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