SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G17330 | AT | Annotation by Michelle Graham. TAIR10: glutamate decarboxylase | chr5:5711141-5714839 FORWARD LENGTH=502 | SoyBase | E_val: 0 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0006536 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutamate metabolic process | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0010359 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0019752 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carboxylic acid metabolic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004351 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glutamate decarboxylase activity | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| GO:0016831 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carboxy-lyase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| KOG1383 | KOG | Glutamate decarboxylase/sphingosine phosphate lyase | JGI | ISS | |
| PTHR11999 | Panther | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE | JGI | ISS | |
| PTHR11999:SF1 | Panther | SEX HORMONE-BINDING GLOBULIN | JGI | ISS | |
| PF00282 | PFAM | Pyridoxal-dependent decarboxylase conserved domain | JGI | ISS | |
| UniRef100_B9SR96 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutamate decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9SR96_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KRN3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRN3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g09660 not represented in the dataset |
Glyma08g09660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g091400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g09660.1 sequence type=CDS gene model=Glyma08g09660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTTTCCAAAACCCGCTTCTGAGTCTGATCTCTTTCTTCATTCCAACTTTGCTTCTCGTTATGCCAGGGACTCTCTTCCCAGGTTCAGCATACCCGAGGACTCCATGCCAAAGGAGGCTGCGTATCAGAACATACACGATGAGTTGCAGCTTGATGCAATTCCAAAGCTGAACTTGGCTTCCTTTGTGACAACTTCCATGGAAGAAGAGTGCAACAAGCTCATCATGGAATCGATAAACAAGAACTATGTCGACATGGACGAATATCCTATCACCACTGACCTTCACAATCGGTGCGTGAACATGATAGCACGTTTATTCCATGCTGAAATTGGAGAAAATGAGATTGCAACTGGAGCAGGAACCGTTGGATCATCTGAGGCCATAATGCTGGCAGGGCTTGCATTCAAGAAGAAGTGGCAGAACAAGCGCAAGGAAGAGGGAAAGCCTTATGATAAGCCAAATTTGGTGACTGGTTCCAACGTGCAGGTATGTTGGGAGAAATTTGCGAGGTATTTTGAAGTGGAGTTGAGAGAAGTGGAGGTGAGGGAAGGCTACTATGTGATGGACCCTGCCAAAGCAGTTGAAATGGTTGATGAGAACACTATTTGTGTGGCTGCAATCTTGGGTTCAACTTACAATGGAGAGTTCGAAGATGTCAAGCTCCTAAATGACCTATTGCTAGAAAAAAACAAGCAAACTGGATGGGATACACCTATTCATGTGGATGCTGCAAGTGGTGGCTTTATTGCTCCATTCCTTTATCCAGAGTTAGAATGGGATTTTAGACTCCCATTGGTGAAGAGCATAAATGTTAGTGGCCACAAGTATGGGCTTGTTTATGCTGGCATTGGTTGGGTTATTTGGAGGACCAAGGATGACTTACCAGAAGACCTTGTCTTCCATATTAATTACCTTGGAGCTGACCAACCCACCTTCACCCTCAATTTCTCTAAAGGTTCTAGCCAGATCATTGCTCAATATTATCAGCTAATTCGTCTTGGCCAAGAGGGGTACCGAAGCATAATGGAGAACTGCAGAGAAAATGCAATGGTGCTGAAGGAAGATTTGGAGAAAAGTGGTCACTTTAACATTCTCTCAAAAGACGATGGTGTTCCTGTGGTGGCATTTTCTCTCAAAGACAGAAGCCGGTACGATGAGTTCAAGATATCAGAGATGTTGCGCCGCCACGGTTGGATCGTGCCGGCGTATCCAATGCCACCTGCTGCTCAACACATCAATGTGCTCCGTGTGGTCATCAGGGCTGAGTTTTCACGCACCCTTGCTGAACGCCTTGCGTTTGACATACACAATGTGATGGATGAACTTGAAAAGTTGCATCCCCCCATAGTGACCAAAAACACAAAGGAAGAGAACAAGGCCATGGTTGAAAATGGGGTGAAGAACACTGCATTGGATGCACACAGGGAAATCATTGCTCAAGAATCCAACAAGCGTCAGAAAATCATGGCAGCTTAG
>Glyma08g09660.1 sequence type=predicted peptide gene model=Glyma08g09660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVFPKPASESDLFLHSNFASRYARDSLPRFSIPEDSMPKEAAYQNIHDELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPITTDLHNRCVNMIARLFHAEIGENEIATGAGTVGSSEAIMLAGLAFKKKWQNKRKEEGKPYDKPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPAKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLLEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKDDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYRSIMENCRENAMVLKEDLEKSGHFNILSKDDGVPVVAFSLKDRSRYDEFKISEMLRRHGWIVPAYPMPPAAQHINVLRVVIRAEFSRTLAERLAFDIHNVMDELEKLHPPIVTKNTKEENKAMVENGVKNTALDAHREIIAQESNKRQKIMAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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