Glyma08g09640 - SoyBase

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Report for Sequence Feature Glyma08g09640

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6848548
stop:	6853702
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02180	AT	Annotation by Michelle Graham. TAIR10: tobamovirus multiplication protein 3 \| chr2:560976-562961 FORWARD LENGTH=303	SoyBase	E_val: 0	ISS
GO:0046786	GO-bp	Annotation by Michelle Graham. GO Biological Process: viral replication complex formation and maintenance	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PF06454	PFAM	Protein of unknown function (DUF1084)	JGI		ISS
UniRef100_I1KRN0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRN0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9ZUM2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZUM2_ARATH	SoyBase	E_val: 2.00E-178	ISS

Expression Patterns of Glyma08g09640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09640

Paralog	Evidence	Comments
Glyma05g26630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g091200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g09640

Limit To All Plant Sequences

>Glyma08g09640.3   sequence type=transcript   gene model=Glyma08g09640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAAAATTATTTTCCCCCTCAAAATTGTCAACAAAGATCTTTCATGTTAAAGACTTTTTTAAGACAAGTTAACTGAATATTAACTACTACGTTCTAATTGTAGAGTGAGTTACATAATTACGTGTATCCAGCACGACGTTTGGATTTCCGTTACCCCTCTCTCTCTTTTTTTTTCTGTCTGAATCCAGATTATATCGCAATCGCCGGCCACAAAATCAAAAACCCCGCAGCAACAATAAAATAAATAAATTGTTACAGAACAAGGCGAAAGAAAAACATTTGAATATTTGTCAGAAAACGTTAAAAAAAGTAGTGGTAGTAATAATTATTAGATAGATTAAGTTGCATTTCTGTTACTCTTTTTTTTCTTTATTTCATCAACAGAAGAAGAAGAAGAAGATCGAACGAAGGCTCCTTCCATTATTCCATTCAGCGATTCCATGGTGGCGAGAGGCGTGCCGGCGATGGCGGTGGTGGCCGTTGCCGCCCTTGACTTGACGGAATCCTCCAACTGGTGGCGGGACATCAACCGCTCCCCGCTCTGGCAGGATCGCATCTTCCACCTCCTCTCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTAGTTCAATTAGTTCGAATACAATGGAGAGTGCCGGAGTATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGTTCGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCGCTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGGCACGTGCCGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATGCTGTGGTTTATGTTATTCAGATTACTTTATGGTTAATATTATGGTGGAAACCTATCAGCGTGCTAGTCATCCTGTCTAAGATGTTCTTTGCAGGGGTTTCTTTGTTTGCAGCCCTTGGTTTTCTTCTTTACGGTGGAAGACTATTCTTGATGCTGCAACGCTTTCCTGTTGAATCCAAAGGTCGACGCAAGAAGCTACAAGAGGTTGGCTATGTGACTACCATATGCTTTTCATGCTTCCTTATCAGATGTGTTATGATGTGCTTTAATGCATTTGATAAAGCTGCCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTTCCTCCCAAGCGTGGTATCACTCAATATCACCCAATTCGCTGAAAAGATTAGCATATGGAGAAAATTTAGTCAGGATTTCCTGAGTGCATGCTCCTCTGCTTTCTTTGATGTTTCTCTCCCCTCCGCAAGGATAATTTCTAGAGGACAGAGAAGTCGGTCTTTCTTCTGTTGAGTGACAAAGCTAATATCATTGTCTTAAAGTTCTCATAAGGTTTGTAGGTTTTGAAACGTGACATTTTATGGATTGTCAAACACGTTGGCTTGTGTTGTATAAGTGATATTTGTGTTGTCTCTAGGAAAATGTGGTTGCTGTTTGAGGTTCTGCAATTCAACACGATGAGCAACCTTTTTTGGGAGAAAAGGACACTGATATATTGTAAAATAGTTTTTCAAGTCTTGTAACTGTTACTAGTTGGTGAAATGTATTGTTCCTTTTCAGTCATGTTCCTGCTAATTCATTCAATTCTATTTTACATATCATTTCTTTCATGTCTTTTGTGAATTTGACGAGGGCTAAATTAAATTTCTATTTTTGGCAGATATACTTTGCTAGCTTTGGAATTTCACGGATGTATTTGATTATTCCTAAGAATGTAACCGCGACTAAGTGAAATTAAAATTTCCTCTTTGAAACGTT

Coding sequences of Glyma08g09640

Limit To All Plant Sequences

>Glyma08g09640.1   sequence type=CDS   gene model=Glyma08g09640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCGAGAGGCGTGCCGGCGATGGCGGTGGTGGCCGTTGCCGCCCTTGACTTGACGGAATCCTCCAACTGGTGGCGGGACATCAACCGCTCCCCGCTCTGGCAGGATCGCATCTTCCACCTCCTCTCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTAGTTCAATTAGTTCGAATACAATGGAGAGTGCCGGAGTATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGTTCGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCGCTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGGCACGTGCCGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATGCTGTGGTTTATGTTATTCAGATTACTTTATGGTTAATATTATGGTGGAAACCTATCAGCGTGCTAGTCATCCTGTCTAAGATGTTCTTTGCAGGGGTTTCTTTGTTTGCAGCCCTTGGTTTTCTTCTTTACGGTGGAAGACTATTCTTGATGCTGCAACGCTTTCCTGTTGAATCCAAAGGTCGACGCAAGAAGCTACAAGAGGTTGGCTATGTGACTACCATATGCTTTTCATGCTTCCTTATCAGATGTGTTATGATGTGCTTTAATGCATTTGATAAAGCTGCCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTTCCTCCCAAGCGTGGTATCACTCAATATCACCCAATTCGCTGA

>Glyma08g09640.3   sequence type=CDS   gene model=Glyma08g09640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCGAGAGGCGTGCCGGCGATGGCGGTGGTGGCCGTTGCCGCCCTTGACTTGACGGAATCCTCCAACTGGTGGCGGGACATCAACCGCTCCCCGCTCTGGCAGGATCGCATCTTCCACCTCCTCTCCATCCTCTACGGAATCGTCGCCGCCGTCGCTCTAGTTCAATTAGTTCGAATACAATGGAGAGTGCCGGAGTATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGTTCGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCGCTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGGCACGTGCCGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATGCTGTGGTTTATGTTATTCAGATTACTTTATGGTTAATATTATGGTGGAAACCTATCAGCGTGCTAGTCATCCTGTCTAAGATGTTCTTTGCAGGGGTTTCTTTGTTTGCAGCCCTTGGTTTTCTTCTTTACGGTGGAAGACTATTCTTGATGCTGCAACGCTTTCCTGTTGAATCCAAAGGTCGACGCAAGAAGCTACAAGAGGTTGGCTATGTGACTACCATATGCTTTTCATGCTTCCTTATCAGATGTGTTATGATGTGCTTTAATGCATTTGATAAAGCTGCCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTTCCTCCCAAGCGTGGTATCACTCAATATCACCCAATTCGCTGA

Predicted protein sequences of Glyma08g09640

Limit To All Plant Sequences

>Glyma08g09640.1   sequence type=predicted peptide   gene model=Glyma08g09640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVARGVPAMAVVAVAALDLTESSNWWRDINRSPLWQDRIFHLLSILYGIVAAVALVQLVRIQWRVPEYGWTTQKVFHFLNFIVNGVRCFVFVFRRDVQKLQPEIVQHILLDMPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPSFYTINAVVYVIQITLWLILWWKPISVLVILSKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCVMMCFNAFDKAADLDVLYHPILNFMYYLLVEILPSTLVLFILRKLPPKRGITQYHPIR*

>Glyma08g09640.3   sequence type=predicted peptide   gene model=Glyma08g09640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVARGVPAMAVVAVAALDLTESSNWWRDINRSPLWQDRIFHLLSILYGIVAAVALVQLVRIQWRVPEYGWTTQKVFHFLNFIVNGVRCFVFVFRRDVQKLQPEIVQHILLDMPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPSFYTINAVVYVIQITLWLILWWKPISVLVILSKMFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFSCFLIRCVMMCFNAFDKAADLDVLYHPILNFMYYLLVEILPSTLVLFILRKLPPKRGITQYHPIR*

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