Glyma08g09610 - SoyBase

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Report for Sequence Feature Glyma08g09610

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6825509
stop:	6832087
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02170	AT	Annotation by Michelle Graham. TAIR10: Remorin family protein \| chr2:556595-558610 REVERSE LENGTH=486	SoyBase	E_val: 3.00E-168	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF03763	PFAM	Remorin, C-terminal region	JGI		ISS
UniRef100_B9RY40	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RY40_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337CCA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337CCA related cluster n=1 Tax=unknown RepID=UPI0002337CCA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g09610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09610

Paralog	Evidence	Comments
Glyma05g26610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g090800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g09610

Limit To All Plant Sequences

>Glyma08g09610.2   sequence type=CDS   gene model=Glyma08g09610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTACGAAAGGATCCAAAAGCCTCAGGGTGGTGGGGGATTTTCACCGGGAAAATTGAGGAGCATGCTACTGGGTGTGGAGAAGAAGAGGAAAGAAGAGGAAGAGCTTGATTCTACTTTCACCACGAGATCTCAGAATTCAGACATGGATGAATCTGGTGGTAGTAGTTCCGATCATTGCAAAGATGTAGATGTTGTGAGTGTCCTTCCTGAATATTCAACTTCTGCTATAGTTCGCACTAGTAGCGTAGAGGCAGTTGGTGGTGATCGTTTTGTGAAGGCTAATGCAGGAGTGAATTCAAGGAGTAGAATCTTGGAAGACCCTTCTTCAGATTATGATAGTGGGCACGATAATATGAGCATGTCCTCGTCAATGTTTGAATTTCAAAAGGCCGAGCGTGCCCCACAGAGGGTTCCCGTGGGGCCATTCTCAAAACCAGCACCATCTAAATGGGATGATGCACAGAAGTGGATAGCAAGTCCAACTTCAAACAGGCCAAAGACAGTGCAGAGCCAGGGGCAAGGTGGGCAAAGTGGGCATGTAGGACCGCGAAAGGTTGGTAGTCTTGGTTATGGAAGCCGGCAATCTTCAATGAAGGTTGTTGTTGAAGTTCCAGATCAAAAAGAAATTGCTTTAGATGAACCAGATACCAAGCAAATTGATACAGATCAGACTAAGATGGAAACTGGAGGACAGAAATTTGTGAGTTGGGAGGCTGATCCCTATGCAATTGCAAGTTCTTGTGTTAGTCTCAGCCAGCACAATTCATCTCTTGCAATCCAAAATGAAACAACATTTGTTCCTCCCCCTTCAACAGCTCGGTCTGTATCAATGAGAGATATGGGTACCGAAATGACCCCTATTGCTAGCCAGGAGCCATCAAGAACAGGTACCCCAGTGAGGGCAACAACACCGATGCGCAGCCCTAATTCTTCCCGGCCTTCTACTCCCCCCAGAGCCTCCCCTGCATCTACTTTAACTGATCTGCATAGTGACAATCTGAATCTCAACATGAATGAGTTGTCCGAAAAGGAGCTACAAATGAAAACCAGGCGAGAAATAATGGTTCTCGGGACACAACTAGGTAAAATGAGCATTGCTGCCTGGGCTAGCAAAGAAGAGGAGGATAAGGATGCATCCACTTCCTTGAAAACAAAAACAGAACCACCTAAAAGTGTCGTTGTAGCACGTGCAGCGGCATGGGAGGAGGCTGAGAAGGCCAAGTATATGGCCAGGTTTAGGCGTGAGGAGATGAAAATTCAAGCATGGGAAAATCATCAGAAAGCAAAAACAGAAGCCAAGATGAAAAAAATTGAGGTAGAAGTTGAAAGAATACGAGGTAAGGCGCATGATAAGCTAATGAACAAATTAGCAGCTGCAAGGCATAAAGCCGAGGAAAAGCGAGCAGCAGCAGAAGCCAATAGAAATCATCAAGCTGCAAAAACTGAAGAGCAAGCAGAGTATATACGAAGAACTGGTCATGTCCCTTCCTCATATTTATCATTTTCTTGCTGCAATTGGTGCTCTTAA

Predicted protein sequences of Glyma08g09610

Limit To All Plant Sequences

>Glyma08g09610.2   sequence type=predicted peptide   gene model=Glyma08g09610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDYERIQKPQGGGGFSPGKLRSMLLGVEKKRKEEEELDSTFTTRSQNSDMDESGGSSSDHCKDVDVVSVLPEYSTSAIVRTSSVEAVGGDRFVKANAGVNSRSRILEDPSSDYDSGHDNMSMSSSMFEFQKAERAPQRVPVGPFSKPAPSKWDDAQKWIASPTSNRPKTVQSQGQGGQSGHVGPRKVGSLGYGSRQSSMKVVVEVPDQKEIALDEPDTKQIDTDQTKMETGGQKFVSWEADPYAIASSCVSLSQHNSSLAIQNETTFVPPPSTARSVSMRDMGTEMTPIASQEPSRTGTPVRATTPMRSPNSSRPSTPPRASPASTLTDLHSDNLNLNMNELSEKELQMKTRREIMVLGTQLGKMSIAAWASKEEEDKDASTSLKTKTEPPKSVVVARAAAWEEAEKAKYMARFRREEMKIQAWENHQKAKTEAKMKKIEVEVERIRGKAHDKLMNKLAAARHKAEEKRAAAEANRNHQAAKTEEQAEYIRRTGHVPSSYLSFSCCNWCS*

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