Report for Sequence Feature Glyma08g09550
Feature Type: gene_model
Chromosome: Gm08
Start: 6802541
stop: 6804232
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g09550
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G18420 AT
Annotation by Michelle Graham. TAIR10: Protein prenylyltransferase superfamily protein | chr3:6324771-6325721 REVERSE LENGTH=316
SoyBase E_val: 3.00E-105 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009536 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastid
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
PTHR26312 Panther
FAMILY NOT NAMED
JGI ISS
PTHR26312:SF65 Panther
JGI ISS
UniRef100_I1KRM4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRM4_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9LS48 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AT3g18420/MYF24_13 n=1 Tax=Arabidopsis thaliana RepID=Q9LS48_ARATH
SoyBase E_val: 1.00E-102 ISS
Expression Patterns of Glyma08g09550
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g09550
Paralog Evidence Comments
Glyma05g26570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g09550 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g090400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g09550
Coding sequences of Glyma08g09550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g09550.1 sequence type=CDS gene model=Glyma08g09550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGACTTCAGCATCCTCATCATCCTCCATCTTCTCCTTCACCCCTAAAACCCTAACCATACCCCCACAGCAACCTCGCTTCACCGTCCGGGCCCACTCCAAACCCCCCATTCTCCCCAACCTCAAAACCCTCGCCGGCGCCGCGGTCTTCGCCGCCGTCGCGCTCCAATTCCCCTCCACCGCACGTGCCTCCCCTCCGCCTCCTCTCGAAACCGACCACCGCCTCAACGTCGAGGAGTCCCTCTCCCCTCTCTCCGACCTCCTCGAAACCAACGCCGAGGCCCTCGCCGCGCTCAAGTCCCTCCTCCAGCAGAAGCTCGAGCTCGGCGAGGACGACGAGGCGCTCGCCATCCTCAAGCGCCTCATCGCCGCGCAGCCCGACGCCGCCGACTGGAAGTTCCTCGCGGCGCGCCTCACCGCGGAGACAGGCGACTCGGACTCCGCGCGCGGCTACTACGAGGAGGTCCTCGCCGCGAACCCGCTCTCTTTCGAGGCGCTCTTCGAGAACGCGCTGCTGATGGACCGGTGCGGCGAGGGGGAGGCCGCGATGCGGCGCCTCGAGGAGGCGCTGCGAGTGGCGGAGGAGGACAAGATGGCGAAGGAGGCCAGAGACGTAAAGCTCATCATGGCGCAGATCATGTTTCTTCAGAAAAACGTGGATGAAGCGTTAGTAATTTATAATCAGCTCACGAAAGAGGATCCTAGGGATTTCAGGCCTTATTTTTGTAGAGGCATGATTTATAGCTTGCTTGATAGGAATGAAGAAGCTAAGGAGCAGTTTGCAAAATACAGGGAATTGAGTCCAAAGAAGTTTGAGGTTGATGGGTATTTGAGAACCCCTTTGTCAAGGATGAAGCTGTTTAGCACTGATGAGAGTTGA
Predicted protein sequences of Glyma08g09550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g09550.1 sequence type=predicted peptide gene model=Glyma08g09550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLTSASSSSSIFSFTPKTLTIPPQQPRFTVRAHSKPPILPNLKTLAGAAVFAAVALQFPSTARASPPPPLETDHRLNVEESLSPLSDLLETNAEALAALKSLLQQKLELGEDDEALAILKRLIAAQPDAADWKFLAARLTAETGDSDSARGYYEEVLAANPLSFEALFENALLMDRCGEGEAAMRRLEEALRVAEEDKMAKEARDVKLIMAQIMFLQKNVDEALVIYNQLTKEDPRDFRPYFCRGMIYSLLDRNEEAKEQFAKYRELSPKKFEVDGYLRTPLSRMKLFSTDES*