Glyma08g09540 - SoyBase

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Report for Sequence Feature Glyma08g09540

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6796599
stop:	6801156
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63510	AT	Annotation by Michelle Graham. TAIR10: FMN-linked oxidoreductases superfamily protein \| chr3:23450542-23452682 FORWARD LENGTH=419	SoyBase	E_val: 0	ISS
GO:0006808	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of nitrogen utilization	SoyBase	N/A	ISS
GO:0008033	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA processing	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0017150	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tRNA dihydrouridine synthase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG2335	KOG	tRNA-dihydrouridine synthase	JGI		ISS
PTHR11082	Panther	TRNA-DIHYDROURIDINE SYNTHASE	JGI		ISS
PTHR11082:SF18	Panther	NITROGEN REGULATION PROTEIN NIFR3-RELATED	JGI		ISS
PF01207	PFAM	Dihydrouridine synthase (Dus)	JGI		ISS
UniRef100_B9RVP7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: tRNA-dihydrouridine synthase n=1 Tax=Ricinus communis RepID=B9RVP7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KRM3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRM3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g09540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09540

Paralog	Evidence	Comments
Glyma05g26560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g090300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g09540

Limit To All Plant Sequences

>Glyma08g09540.1   sequence type=CDS   gene model=Glyma08g09540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAGCTTGCAGGATATTCCCTGGCCGTTTCATTTGCTCCCATAAGTTCTAATGTCGTTAAAAGCAATAAAAGATTCACGGTAGGTATATCTCATAGGAATAGGTGCAGCTATAGGCTGTTTTCTACTCATGCCCAGAAACACCAATTACATGAGAAACCTGGGGTGGTTGCCAGATACCACCTTCCTCCTTGGTTTAGTGTTGCTCCAATGATGGACTGGACAGACCATCACTATAGGACTCTAGCGCGCCTCATATCAAAACATGCTTGGCTGTACACGGAGATGCTTGCAGCTGAAACAATTGTTCATCAAAAGGACAATTTGGACAGATTCTTGGCATATTCTCCAGATCAGCATCCCATTGTGCTTCAAATTGGAGGGAGTAATATAGAAAATCTGGCTAAAGCAACTGAGCTTGCTAATGCTTATTGCTATGATGAGATCAACTTAAACTGTGGGTGCCCTAGTCCAAAAGTTGCTGGGCATGGGTGTTTTGGTGTGAGCCTTATGCTTAACCCCAAGTTTGTTGCTGAGGCCATGTCAGCAATTGCTGCCAGCACAAATGTACCTGTCAGTGTCAAATGTCGAATTGGCGTGGACGATCATGATTCTTACAATGAGTTGTGTGATTTCATATATCAGGTTTCTTCTTTATCACCCACTAAGCATTTCATAATTCACTCGCGGAAGGCACTTCTCAATGGCATTAGCCCTGCTGAAAATAGGAGTATTCCTCCACTAAAATATGAATACTTCTATGGTCTCTTACGTGACTTTCCTGACCTAAGATTTACAATCAATGGTGGCATTACTAGTGTTGATGAGGTTAGTGCAGCTCGAGAAGCTGGAGCTCATGGTGTCATGGTTGGACGTGCAGCATACAACAACCCTTGGCAGATTTTGGGACATGTTGACGCTGCAATTTATGGTACACCAAGCTGTGATCTTACACGACGTCAGGTCCTTGAAAGATATCTAGTCTATGGGGACTCAGTATTGGGAAAATACGGACATCGGCCAACTTTGCGAGATATTGTGAAGCCTCTACTCCATCTTTTCCATTCGGAACCTGGGAATGGACTTTGGAAGCGCAAAGCTGATGCTGCTTTCAAAAATTGCACGACAATGGAATCATTTTTTGAAGAAACCCTTGTAGCAATTCCCGACTCAGTATTGGATTCGCCTGTTGCGGAGCCACCTCCTGGCCGTGATCTTTTTGCTAACATGCACAATTTATTGCCTGCACCATACAGAACAAGAGAAGCAACAGTAATTATTTGCGCTTAA

Predicted protein sequences of Glyma08g09540

Limit To All Plant Sequences

>Glyma08g09540.1   sequence type=predicted peptide   gene model=Glyma08g09540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKLAGYSLAVSFAPISSNVVKSNKRFTVGISHRNRCSYRLFSTHAQKHQLHEKPGVVARYHLPPWFSVAPMMDWTDHHYRTLARLISKHAWLYTEMLAAETIVHQKDNLDRFLAYSPDQHPIVLQIGGSNIENLAKATELANAYCYDEINLNCGCPSPKVAGHGCFGVSLMLNPKFVAEAMSAIAASTNVPVSVKCRIGVDDHDSYNELCDFIYQVSSLSPTKHFIIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPDLRFTINGGITSVDEVSAAREAGAHGVMVGRAAYNNPWQILGHVDAAIYGTPSCDLTRRQVLERYLVYGDSVLGKYGHRPTLRDIVKPLLHLFHSEPGNGLWKRKADAAFKNCTTMESFFEETLVAIPDSVLDSPVAEPPPGRDLFANMHNLLPAPYRTREATVIICA*

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