SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G65810 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:24477043-24480728 REVERSE LENGTH=1016 | SoyBase | E_val: 8.00E-45 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0048451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal formation | SoyBase | N/A | ISS |
| GO:0048453 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sepal formation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| PTHR10887 | Panther | DNA2/NAM7 HELICASE FAMILY | JGI | ISS | |
| PTHR10887:SF27 | Panther | SPLICING ENDONUCLEASE POSITIVE EFFECTOR SEN1 | JGI | ISS | |
| PF00580 | PFAM | UvrD/REP helicase | JGI | ISS | |
| UniRef100_G8A365 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Regulator of nonsense transcripts-like protein n=1 Tax=Medicago truncatula RepID=G8A365_MEDTR | SoyBase | E_val: 2.00E-156 | ISS |
| UniRef100_UPI0002339B09 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339B09 related cluster n=1 Tax=unknown RepID=UPI0002339B09 | SoyBase | E_val: 0 | ISS |
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Glyma08g09531 not represented in the dataset |
Glyma08g09531 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g26545 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g09531.1 sequence type=CDS gene model=Glyma08g09531 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTGGGCCTTATTCCTTTATAAATGTAGTTGGTGGCATTGAAGAGTTTGATGATGCTGGACGAAGCCGGAAAAATATGGTTGAAGTAGCAGTTGTGATGAAAATAATTAAAAACTGTTTTAAAGCATGGCGTGACTTAAAGGATAACCTCAGTATAGGTGTACGGTATGATACACACGATGGATTTGATGTGAAGGTGAAAACAATTGATGGTTTCCAGGGTGGAGAGCGGGACATTAATATATTATCAACTGTACGAACTAAACGCAGTACTTCGCTTCAATTCATCTCCAATCACCATAGGACTAAGGTTGCTCTTACAAGAGCTAGGTACTTTTTGTTGATTTTGGGAAATGAAAGGACTCTAACAAATGAGGAAAATGTTTGGAAATCTTTGGTGCTTGATGCTAAAAAGCGTCAATGTTTCTTTAGTGCTGATGAAGACAAGGAATTGGCGAAAAGTATCTGGGATACCAAGAAAGAGTTGGATAAGTTAGATGATTTGCTTAATGCAGATAACTTCTTTTTCAAAAATTCCAGGTGGAAGGAATATGTGATCCCAGTAAGTTGGGAAAGATCAGTAGAGATCACTAAATTTAAGACTCTTGATAATAATGGAAATGAAGCTGAATTAGGTGGTTGTGATCAAAGAATTTATGTGGAGAACTCAAAGGTCGAGGAGAGTTTGTTATTGATGAAATTCTACTCCTTATCATCAGTTGTATACATTTGTATTGGGTCGCTCTGGTACCGGAAAACCACTGTTTTGACTGTAAAGTTATTTCAGAAGGAGTACAAGCATCATATGGCTGTTAAAGAAACATATGGAATTAACAGTGCTGCAATTCCTTGTTTGAATCATGATAAAGAGTATAAAGAGAATTCTACTATGAATGATAGGCCTGTCTTACTCCAGCTATTTGTTACAGTCAGTCCTAAACTATGTCAGGCAGTAAAACATCACGTTGTGCGATTGAAAAGAATCATATGTGGTGGCAATATTTCTGCTGAAAGAAATTCTATTGAGGAAGATATTGTTGATGTTGATACGTCAATACAGTTTAAGAATACACCAGACTCTTTTATGAATCTTCCTATCGACTCATATCCCCTTGTGATAACATTTCAGAAGTTTCTAATGATGCTTGATGGGACTGTGGGAATTTCCTATTTAGAGAGATTCAGTGACTTATCTTCTGATGCTAAGAACCTCAGTGCAAGGTCTGTTGCTTTGGAAACATTCATCAGAAAGAAAGAGGTAACTTATGACAGGTTTGATTCATTGTATTGGCTCCATTTTAATTCTCAGTACACTAAGAAACTTGATTCCTCTAGGGTGTTCACTGAAATCATATCCCATATAAAAGGGGGTATGCAAGGGGTGGAATCTAGCGATGGTAAGCTAAGCCGTGAGGAATATCTTTCATTATCTGAAAATCAAGGATCAAGTCTTACCAGGCCGAAAAGAGAGATCATACATGATGTTTATCAAAGTTATGAGAAAATGAAGAATGATAAAGGGGATTTTGATTTGGCGGACATTGTAATTTACCTTCACCGTCGTCTCAAAATGAACAAATATGAGGGTGACAAGATGCACTTTTTGTACATTGATGAGGTTCAAGATTTAACCATGACTCAAATTGCTTTGTTCAAATATGTGTGCCAAAATGTAGAAGAAGGTTTTGTGTTTTGTGGGGCCACTGCTCAAACAATAGCAAGGGGACTAGATTTTAGGTTCCAAGATATCAAATCTCTCTTTTACATGAAATTTGTGCTAGAATCAAAGGGAAACACATACAATCAAGGAAAAGTGAAAGGGAAAATTTCAGAAACTTTTTTATTGAGTAGGAACTTTCACACTCACGCTGGAGTGCTGAAACTATCCCAGAGCACCATTGAACTTCTTTTTCTGGTTCTTAAATGTAGAAGTAGAAAAAATGCAATTGTAACTATTTTTGGCAACAGTGGACATGTGGCTGGAAAAATTGTTGGCTTTGGTGCAGAGAAAGTAATTTTGGATGTATTGCTGTACAACTTTTTTGACTCTTCACCTTTGAAAAATCGAGGGAGAGTGATATATGAGTATATGAAGGAACAAGATATGCTAGAACCTACAGAACATAAGTCGTATCCAAATTTCAGAGATTCCAAACACAATCTCTTGAGCTCTGAACTTAAGCAGTTATATGTGGCTATAACTCTTACAAGACAGAGATTGTGGATATGTGAGAATACGGAGGAATACTCTAGACCT
>Glyma08g09531.1 sequence type=predicted peptide gene model=Glyma08g09531 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFGPYSFINVVGGIEEFDDAGRSRKNMVEVAVVMKIIKNCFKAWRDLKDNLSIGVRYDTHDGFDVKVKTIDGFQGGERDINILSTVRTKRSTSLQFISNHHRTKVALTRARYFLLILGNERTLTNEENVWKSLVLDAKKRQCFFSADEDKELAKSIWDTKKELDKLDDLLNADNFFFKNSRWKEYVIPVSWERSVEITKFKTLDNNGNEAELGGCDQRIYVENSKVEESLLLMKFYSLSSVVYICIGSLWYRKTTVLTVKLFQKEYKHHMAVKETYGINSAAIPCLNHDKEYKENSTMNDRPVLLQLFVTVSPKLCQAVKHHVVRLKRIICGGNISAERNSIEEDIVDVDTSIQFKNTPDSFMNLPIDSYPLVITFQKFLMMLDGTVGISYLERFSDLSSDAKNLSARSVALETFIRKKEVTYDRFDSLYWLHFNSQYTKKLDSSRVFTEIISHIKGGMQGVESSDGKLSREEYLSLSENQGSSLTRPKREIIHDVYQSYEKMKNDKGDFDLADIVIYLHRRLKMNKYEGDKMHFLYIDEVQDLTMTQIALFKYVCQNVEEGFVFCGATAQTIARGLDFRFQDIKSLFYMKFVLESKGNTYNQGKVKGKISETFLLSRNFHTHAGVLKLSQSTIELLFLVLKCRSRKNAIVTIFGNSGHVAGKIVGFGAEKVILDVLLYNFFDSSPLKNRGRVIYEYMKEQDMLEPTEHKSYPNFRDSKHNLLSSELKQLYVAITLTRQRLWICENTEEYSRP
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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