Glyma08g09440 - SoyBase

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Report for Sequence Feature Glyma08g09440

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6739615
stop:	6745990
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73360	AT	Annotation by Michelle Graham. TAIR10: homeodomain GLABROUS 11 \| chr1:27578893-27581820 REVERSE LENGTH=722	SoyBase	E_val: 1.00E-110	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010091	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome branching	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PTHR24325	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24325:SF193	Panther		JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
PF01852	PFAM	START domain	JGI		ISS
UniRef100_B9SKS6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Homeobox protein GLABRA2, putative n=1 Tax=Ricinus communis RepID=B9SKS6_RICCO	SoyBase	E_val: 5.00E-155	ISS
UniRef100_UPI00023392BC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023392BC related cluster n=1 Tax=unknown RepID=UPI00023392BC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g09440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g09440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g089300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g09440

Limit To All Plant Sequences

>Glyma08g09440.2   sequence type=CDS   gene model=Glyma08g09440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGCTTCAAAATCAGGTGGTGGATCAGGTCGTGGTCAACAAGGTGATTACCATTGGCGTAATCGTCATGGTCGCGATAAGGTTGCTAGACTTGAGGAAATATTCAAGGAATGCACACATCCAAATGAAGTGCGACGCCGTCAAATAGGCGAGGAGCTCGGGCTTGATCCTGAACAAGTAAAATTTTGGTTTCAAAACAAGAAGACGCATATAAGGACTATAAATGAGCGATTAGATACAGATGCTCTTCGGCTTGAGAATGAAAGGATACAATCGGAAAACAACAAAATGAGAGAGACTTTGGAGAATCTTTCATGCGGATCTTGTGGGGGTCGAGCCATGGAACCAGTAAAGCATCAACTTTCCTTGCAAGTCTTAAGGGGGGAAAATATTCTATTAACTAAAGAGTGCGAGAGGATAACCTCACTTATGGCAAACAATGGGATAAATATTAATCCAGCACTACTTCCTGTCCTTCCTTCTTCTTCATCACATGATGCCTTAGGAGGAAGTTTACTAAATCAACCAGTTGGAATTCCTGCTCATAATCAATTCATTTCTAACCATGATAACCATTATATTCCTGCCGCAATTCCAACTCCTTTTCAGGATAATCCTATTGTTAGCCCTCCTAGCCATAATCAAGACATTAACCCTGCTCCTACCATTGATCAACACATTCCTACTCTTGATGATCCCACTCTCATTGGAGATAATTCTCCTTTGATTTCAAGTTTTGATTATAATATTCCAGCTTTGGTTACTGCTCTTGATCGAAATCTTCCCGCAATGATTCATCCTCACGATCAAAATAATAGCATTCCTTCCGCTGAGAAAGAAATTCATCAAGTGTCTAACAATTCAAACAATAACCTTTCTGCTCTAGAGTTGGATGCAGTTCAAATTCTAAACAATGATATGTTACCCCAACCAATGAAGAGCCTAAGTAAAGATATGGATAGTGTACAAATGTTGAAGATTGCAGAAGATGCAATGGAAGAATTGATGAAACTTCTCAGTTTGAACGAGCCCTTCTGGTTTAGATCTTTACTAGATGGGAAATTCAATCTTCGGCATGATTGCTACAAAAGGATATTTGGTAGGAGCAATTGCTTAAGTGGACCTCATGTACGAATGGAATCGTCGAAAGATTCACGAGTTGTGAAAATGAGTGGGGCACAACTCGTTGAAATGTTCTTAAATTCGGTTAGCTCTTCTAACCCTTCTTATTTTGTCAAATATTTTATGGACAAATGGGTTGATCTATTCCCAACAATTGTTAAAAAAGCTCAAACAATTCAAGTACTTGAAAGTGGTTCATCAGGAAACCGAAATGGAGCTCTACAGTTGGTGAATGCAGAAATGCACATTCTTTCACATTTGGTTCCGAGTCGGGAATTTCTCTTCCTTCGTTATTGTAAACAAATTGAAGTAGGTATATGGGCCATAGGGGATGTGTCAATTGATTCTTCAACATACAAAACTACTGTTTCTCACGCTCGAAGGCTTCCATCTGGATGCCTGATTCAAGAAAAGTCGTCTGAGGGATTGTGCATGGTTTCATGGATGGAGCACGTGGAAGTGAATGAAAAGATGCAAACCCACAATCTTTTCAGAGATACTATTTGTGGGAATAACGCATATGGAGCAGACAGATGGGTTATGACCCTTGAAAGAATGTGCGAAAGGTTTGCAAGCTACTCAGCTAAAACTATACCTAGTTGTGAGACTGGAGGAGTTGTTAGATCGCCCGACGTAAAAAGAAACATAATGCACCTAACGCATCGTATGGTGAAAATGTTTTGTGGGAATTTGGACATGCAAGACAATCCAAATTTCCCAAATTTAACCCGGATGAACAACAATGGGGTTAAGTTATCCATTCGCGTGAATCACACAGGGCCAAATGAGCCTAAAGGCACGATCATTGGTGCTGCTATCTGCTTTCGGGTTCCACTCTCTCCACAAATTGTTTTCGATAACTTGATAGACAACAACAAACGAGCCAAGTGGGATACTCTATGCGATGGAAGTGCAGGGCACGAGATTCAACGAATCTCAACTGGAAGCAATCCTGGAAATTGTATTTCAATCATGCGGCCTTTCATCCCTAAAGAGAACAATATGGTGATTCTCCAAGAAAGTTATGTAGATGCTTTGGGATCCATGTTGGTATTCGCTCCTTTTTATATGGAAGGATTGGATTTGATCATGAAGGGAGAAGACTCATCACTGTTTCCGATTCTTCCCTCTGGCCTTACCATATCTTGGGATTACCAATCAAATAAAGTTCCTGAAGGACAATCTGGACAAGTTGGTCAATCAAGGGGTTCGTTGGTGACTCTAATGTTTCAACTTTTGGCATCCAGTACATCTAAAATAGATAATGTAGACATGAAATTAATAGGTTCTATTAATACACTCGTGACCTCAACTGTGGAGAAAATTAAAGATGCTTTGAATTGCTCAAATTCGAAGTAA

Predicted protein sequences of Glyma08g09440

Limit To All Plant Sequences

>Glyma08g09440.2   sequence type=predicted peptide   gene model=Glyma08g09440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSASKSGGGSGRGQQGDYHWRNRHGRDKVARLEEIFKECTHPNEVRRRQIGEELGLDPEQVKFWFQNKKTHIRTINERLDTDALRLENERIQSENNKMRETLENLSCGSCGGRAMEPVKHQLSLQVLRGENILLTKECERITSLMANNGININPALLPVLPSSSSHDALGGSLLNQPVGIPAHNQFISNHDNHYIPAAIPTPFQDNPIVSPPSHNQDINPAPTIDQHIPTLDDPTLIGDNSPLISSFDYNIPALVTALDRNLPAMIHPHDQNNSIPSAEKEIHQVSNNSNNNLSALELDAVQILNNDMLPQPMKSLSKDMDSVQMLKIAEDAMEELMKLLSLNEPFWFRSLLDGKFNLRHDCYKRIFGRSNCLSGPHVRMESSKDSRVVKMSGAQLVEMFLNSVSSSNPSYFVKYFMDKWVDLFPTIVKKAQTIQVLESGSSGNRNGALQLVNAEMHILSHLVPSREFLFLRYCKQIEVGIWAIGDVSIDSSTYKTTVSHARRLPSGCLIQEKSSEGLCMVSWMEHVEVNEKMQTHNLFRDTICGNNAYGADRWVMTLERMCERFASYSAKTIPSCETGGVVRSPDVKRNIMHLTHRMVKMFCGNLDMQDNPNFPNLTRMNNNGVKLSIRVNHTGPNEPKGTIIGAAICFRVPLSPQIVFDNLIDNNKRAKWDTLCDGSAGHEIQRISTGSNPGNCISIMRPFIPKENNMVILQESYVDALGSMLVFAPFYMEGLDLIMKGEDSSLFPILPSGLTISWDYQSNKVPEGQSGQVGQSRGSLVTLMFQLLASSTSKIDNVDMKLIGSINTLVTSTVEKIKDALNCSNSK*

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