Glyma08g09410 - SoyBase

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Report for Sequence Feature Glyma08g09410

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6718172
stop:	6722980
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G47630	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Mitochondrial matrix Mmp37 (InterPro:IPR015222); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr3:17563254-17565162 REVERSE LENGTH=332	SoyBase	E_val: 2.00E-152	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2986	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13619	Panther	UNCHARACTERIZED	JGI		ISS
PF09139	PFAM	Mitochondrial matrix Mmp37	JGI		ISS
UniRef100_G8A1V5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MMP37-like protein n=1 Tax=Medicago truncatula RepID=G8A1V5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KRK9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRK9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g09410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09410

Paralog	Evidence	Comments
Glyma05g26480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g089000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g09410

Limit To All Plant Sequences

>Glyma08g09410.1   sequence type=CDS   gene model=Glyma08g09410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAATGCCACATTTCGCAGTTTCCTTCAGGTTCTTCCCCCTGTTGAATTTGCATGCGTCTATGGATCATCTCTTCATCCATCCAACCACGACAAGACAATCATGACAGATTATATTCTTGGCGTATCTGATCCAAAACAGTGGCATTCTGAGAATCTGAAATTGAACAAGCATCACTATGCGTCATGGATGGTGCACCTTGGTGGCGAGAGCCTGATTACTGGAGTTGCTGATAGAATTGGTGTGGGAGTGCATTTCAACCCTTTTGTTACTTGGAATGGAAAGCTGTTCAAGTATGGGGTTGTTCGAATGCATGACTTACTTCAAGACGTACAGTATTGGGAGAAATTCTACTTGTGTGGCCGGTTACAGAAACCAGTTCATATTGTTGTCGATAATTTAGATGTCAGCAGCACCAATTCTGTTAACTTGAGAGCTGCAGTGTCAGCTGCTCTTCTCCTGCTTCCATCAGAATTCACAGAGGCAGATCTATATGCCAAAGTATGTAGTCTTTCATACACAGGTGATATACGCATGTTATTTGCTGAGGATAAAAGCAAGGTGAAAAAGATTGTTACTGGGCAGTTTGATCTATTCCACTTAATGTATAAGCCATTTCTCGAAGAATATGAGGCTAAGAAGTTATTGAGACTTTCATCAACTGCCAAGAATCAAATACATGTCTCTCAGGATTGTGACTTATCAGTTGCTTGTTCTCTAGTTTCTGCTCTTCCTTCATCAATCAGAAGCCAGATCAGCATGAAAGAAGAAATAAGGGAAACTGGTAGAGTCATACCTGATACTAAAGTTAGCACAAGAGAAGCAGCTGCGAATTGCTTGCAGAGAATTCTGAGGCAAAGAGTAATGGTTTCAAGTGCAAGGCAGGCCATATCAGGCTTTCTGGCTGTTGGTGGGGTAAATGCTACCAGATATCTTGCTAAGAAAGTTAACAAAGCCTGGAAATCATGGAGCTGA

Predicted protein sequences of Glyma08g09410

Limit To All Plant Sequences

>Glyma08g09410.1   sequence type=predicted peptide   gene model=Glyma08g09410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNATFRSFLQVLPPVEFACVYGSSLHPSNHDKTIMTDYILGVSDPKQWHSENLKLNKHHYASWMVHLGGESLITGVADRIGVGVHFNPFVTWNGKLFKYGVVRMHDLLQDVQYWEKFYLCGRLQKPVHIVVDNLDVSSTNSVNLRAAVSAALLLLPSEFTEADLYAKVCSLSYTGDIRMLFAEDKSKVKKIVTGQFDLFHLMYKPFLEEYEAKKLLRLSSTAKNQIHVSQDCDLSVACSLVSALPSSIRSQISMKEEIRETGRVIPDTKVSTREAAANCLQRILRQRVMVSSARQAISGFLAVGGVNATRYLAKKVNKAWKSWS*

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