SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G44740 | AT | Annotation by Michelle Graham. TAIR10: Y-family DNA polymerase H | chr5:18047903-18051779 REVERSE LENGTH=672 | SoyBase | E_val: 0 | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0042276 | GO-bp | Annotation by Michelle Graham. GO Biological Process: error-prone translesion synthesis | SoyBase | N/A | ISS |
| GO:0042732 | GO-bp | Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003684 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding | SoyBase | N/A | ISS |
| GO:0003887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG2095 | KOG | DNA polymerase iota/DNA damage inducible protein | JGI | ISS | |
| PTHR11076 | Panther | DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER | JGI | ISS | |
| PTHR11076:SF11 | Panther | gb def: conserved hypothetical protein [streptomyces coelicolor a3(2)] | JGI | ISS | |
| PF00817 | PFAM | impB/mucB/samB family | JGI | ISS | |
| PF11799 | PFAM | impB/mucB/samB family C-terminal | JGI | ISS | |
| UniRef100_G8A1V2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase eta n=1 Tax=Medicago truncatula RepID=G8A1V2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KRK8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRK8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g09400 not represented in the dataset |
Glyma08g09400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g088900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g09400.1 sequence type=CDS gene model=Glyma08g09400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGGTGGCGAGGCGAGAGACGTGCGATGGAAGAGTGATTGCTCATGTAGACATGGATTGCTTCTATGTTCAAGTGGAACAGAGAAAGCAACCAAATTTAAGAGGCTTGCCCTCTGCAGTCATACAGTACAACTCCTACAAAGGTGGAGCCCTCATTGCTGTTAGCTATGAGGCTCGCCGATGTGGCGTCAAACGTTCAATGCGAGGGGATGAAGCCAAGGAGGCATGCCCGCAAATTCAACTGGTCCAAGTCCCGGTGGCGCGTGGTAAGGCTGATCTCAACTCGTACAGGAATGCGGGTTCAGAGGTTGTTTCGGTTCTTTCACAGAAGGGCCGTTGCGAAAGGGCTTCGATTGATGAGGTATATCTTGATCTAACCCATGCTGCTGAAACCATGTTGATGGAAACTCCTCTGGATAGCATGCAAGACTTTGAGGATGAAGTTCTCAAGTCACATGTTTTGGGTTTGGAAATTAAGGATGGAAGTGACGCCAAAGATGAAGTTAGGAAGTGGCTTTGCAGGAGTGATGCTAGTTACCAAGATAAGCTATTAGCTTGTGGGGCTCTCATTGTGTGTGACCTCAGGATGAAGGTGCTGAAAGAGACAGAATTCACATGCTCTGCTGGTATTGCTCATAATAAGATGCTGGCTAAACTTGCAAGTGCTATGAACAAACCTGCACAACAAACAGTTGTGCCACAATCATCTGTTGAAGGGTTGCTTGCTTCTTTGCCAATAAAGAAAATGAAACACCTTGGGGGAAAGCTGGGGAGTTCCTTACAAAGTGATCTTGGTGTCAACACTGTTGGTGATCTGCTTCAGTTTTCAGAGGAGAAGTTACAACAGTGGTATGGGATCAATACTGGTACTTGGTTGTGGAATATTGCTAGAGGAATCAGTGGGGAAGAAGTTGAGGGGCGACTACTTCCAAAGAGCCATGGTTCTGGCAAGACATTTCCTGGGCCTCAGGCTTTGAAGACCGTTGATTCTGTTCAACACTGGCTTAATCAATTGTGTGAAGAGCTGAACGAACGCCTTCACTCTGACCTTGATCAAAACAAACGGATTGCACAGACACTGACTCTACATGCTAGAGCATATAAGACAGGGGATTCAGATTCTCATAGAAAGTTTCCTTCTAAATCTTGTCCTTTAAGGTATGGGACTAGAAAGATTCAAGAGGATGCCCTAATTCTATTTCAAGCTGGGTTACGTGATTTTTTGGGCTTCTACAACTGTAAGGCTCATGGAAACGAAAATAACAACTGGGGAGTAACATCACTTTCTGTTTCTGCAAGTAAACTTGTGTCCATACCATCTGGGACACATTCAATTGTTAAATACTTTGGAGGGTCATTTCCATCCAGTTCTACATCAAATCAATCGCTGGATGTTGTGATTGATGAAGCTGCTCCATCCTCGCCTTCAGGAAGTGGAAATTGTTCAGGATTGGTTCCCAATGAATTTGAGCTTGAATATCCTGAAGACACAGGAATGAAAGATTCAAAGGCTTGTTTGGATCAACAGGATCCGTTGTGTCATTTATCCTGTAAAGCAGATGGCTTGACTGAAGAATCCTCCCTCGTGTCACCCTCAGGAAGCGAAGACAGAATCCTGCACAATGAGCCACATAGAGATTTACCTGCAACAGATCTTAGGCGTGTTTCGAATATCTCTAGTTTGAAAGCAGTTGGGAAGAAAAAGACAGCAGGAAAGAAGCTTCAAGGGAATTGTTCAATTGTACATTTCTTCAATAATTACCATAATTCCCAGTCTTCATTGGAGCAGAAGAATGTCAAAATATCATCATCACTTGGATCTCACTCTGCTGATAATAGTCATTCAACTTGTATTCAAGTTGAGATGCCTGCTGAGCACCCTCATGAAGAGTTTGATACAAACAAGAGTCGATGTAGCGTAGGTAATATGCCACAAGGAAGGCAAGATTGGAGTTATAACATCAATGAGATTGACCCCTCTATCATCAATGAATTACCACCAGAAATTCAGCAAGAGTTTCAAATCTGGCTTAGGCCGCATAAGCGGCCTAATGTGGCTAAACGAGGTTCTAGTATTACTCACTATTTCTCACCTGACAAAAGTAGATAA
>Glyma08g09400.1 sequence type=predicted peptide gene model=Glyma08g09400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPVARRETCDGRVIAHVDMDCFYVQVEQRKQPNLRGLPSAVIQYNSYKGGALIAVSYEARRCGVKRSMRGDEAKEACPQIQLVQVPVARGKADLNSYRNAGSEVVSVLSQKGRCERASIDEVYLDLTHAAETMLMETPLDSMQDFEDEVLKSHVLGLEIKDGSDAKDEVRKWLCRSDASYQDKLLACGALIVCDLRMKVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPQSSVEGLLASLPIKKMKHLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQQWYGINTGTWLWNIARGISGEEVEGRLLPKSHGSGKTFPGPQALKTVDSVQHWLNQLCEELNERLHSDLDQNKRIAQTLTLHARAYKTGDSDSHRKFPSKSCPLRYGTRKIQEDALILFQAGLRDFLGFYNCKAHGNENNNWGVTSLSVSASKLVSIPSGTHSIVKYFGGSFPSSSTSNQSLDVVIDEAAPSSPSGSGNCSGLVPNEFELEYPEDTGMKDSKACLDQQDPLCHLSCKADGLTEESSLVSPSGSEDRILHNEPHRDLPATDLRRVSNISSLKAVGKKKTAGKKLQGNCSIVHFFNNYHNSQSSLEQKNVKISSSLGSHSADNSHSTCIQVEMPAEHPHEEFDTNKSRCSVGNMPQGRQDWSYNINEIDPSIINELPPEIQQEFQIWLRPHKRPNVAKRGSSITHYFSPDKSR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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