Glyma08g09400 - SoyBase

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Report for Sequence Feature Glyma08g09400

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6711103
stop:	6717542
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G44740	AT	Annotation by Michelle Graham. TAIR10: Y-family DNA polymerase H \| chr5:18047903-18051779 REVERSE LENGTH=672	SoyBase	E_val: 0	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0042276	GO-bp	Annotation by Michelle Graham. GO Biological Process: error-prone translesion synthesis	SoyBase	N/A	ISS
GO:0042732	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003684	GO-mf	Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding	SoyBase	N/A	ISS
GO:0003887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG2095	KOG	DNA polymerase iota/DNA damage inducible protein	JGI		ISS
PTHR11076	Panther	DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER	JGI		ISS
PTHR11076:SF11	Panther	gb def: conserved hypothetical protein [streptomyces coelicolor a3(2)]	JGI		ISS
PF00817	PFAM	impB/mucB/samB family	JGI		ISS
PF11799	PFAM	impB/mucB/samB family C-terminal	JGI		ISS
UniRef100_G8A1V2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase eta n=1 Tax=Medicago truncatula RepID=G8A1V2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KRK8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRK8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g09400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g09400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g088900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g09400

Limit To All Plant Sequences

>Glyma08g09400.1   sequence type=CDS   gene model=Glyma08g09400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGTGGCGAGGCGAGAGACGTGCGATGGAAGAGTGATTGCTCATGTAGACATGGATTGCTTCTATGTTCAAGTGGAACAGAGAAAGCAACCAAATTTAAGAGGCTTGCCCTCTGCAGTCATACAGTACAACTCCTACAAAGGTGGAGCCCTCATTGCTGTTAGCTATGAGGCTCGCCGATGTGGCGTCAAACGTTCAATGCGAGGGGATGAAGCCAAGGAGGCATGCCCGCAAATTCAACTGGTCCAAGTCCCGGTGGCGCGTGGTAAGGCTGATCTCAACTCGTACAGGAATGCGGGTTCAGAGGTTGTTTCGGTTCTTTCACAGAAGGGCCGTTGCGAAAGGGCTTCGATTGATGAGGTATATCTTGATCTAACCCATGCTGCTGAAACCATGTTGATGGAAACTCCTCTGGATAGCATGCAAGACTTTGAGGATGAAGTTCTCAAGTCACATGTTTTGGGTTTGGAAATTAAGGATGGAAGTGACGCCAAAGATGAAGTTAGGAAGTGGCTTTGCAGGAGTGATGCTAGTTACCAAGATAAGCTATTAGCTTGTGGGGCTCTCATTGTGTGTGACCTCAGGATGAAGGTGCTGAAAGAGACAGAATTCACATGCTCTGCTGGTATTGCTCATAATAAGATGCTGGCTAAACTTGCAAGTGCTATGAACAAACCTGCACAACAAACAGTTGTGCCACAATCATCTGTTGAAGGGTTGCTTGCTTCTTTGCCAATAAAGAAAATGAAACACCTTGGGGGAAAGCTGGGGAGTTCCTTACAAAGTGATCTTGGTGTCAACACTGTTGGTGATCTGCTTCAGTTTTCAGAGGAGAAGTTACAACAGTGGTATGGGATCAATACTGGTACTTGGTTGTGGAATATTGCTAGAGGAATCAGTGGGGAAGAAGTTGAGGGGCGACTACTTCCAAAGAGCCATGGTTCTGGCAAGACATTTCCTGGGCCTCAGGCTTTGAAGACCGTTGATTCTGTTCAACACTGGCTTAATCAATTGTGTGAAGAGCTGAACGAACGCCTTCACTCTGACCTTGATCAAAACAAACGGATTGCACAGACACTGACTCTACATGCTAGAGCATATAAGACAGGGGATTCAGATTCTCATAGAAAGTTTCCTTCTAAATCTTGTCCTTTAAGGTATGGGACTAGAAAGATTCAAGAGGATGCCCTAATTCTATTTCAAGCTGGGTTACGTGATTTTTTGGGCTTCTACAACTGTAAGGCTCATGGAAACGAAAATAACAACTGGGGAGTAACATCACTTTCTGTTTCTGCAAGTAAACTTGTGTCCATACCATCTGGGACACATTCAATTGTTAAATACTTTGGAGGGTCATTTCCATCCAGTTCTACATCAAATCAATCGCTGGATGTTGTGATTGATGAAGCTGCTCCATCCTCGCCTTCAGGAAGTGGAAATTGTTCAGGATTGGTTCCCAATGAATTTGAGCTTGAATATCCTGAAGACACAGGAATGAAAGATTCAAAGGCTTGTTTGGATCAACAGGATCCGTTGTGTCATTTATCCTGTAAAGCAGATGGCTTGACTGAAGAATCCTCCCTCGTGTCACCCTCAGGAAGCGAAGACAGAATCCTGCACAATGAGCCACATAGAGATTTACCTGCAACAGATCTTAGGCGTGTTTCGAATATCTCTAGTTTGAAAGCAGTTGGGAAGAAAAAGACAGCAGGAAAGAAGCTTCAAGGGAATTGTTCAATTGTACATTTCTTCAATAATTACCATAATTCCCAGTCTTCATTGGAGCAGAAGAATGTCAAAATATCATCATCACTTGGATCTCACTCTGCTGATAATAGTCATTCAACTTGTATTCAAGTTGAGATGCCTGCTGAGCACCCTCATGAAGAGTTTGATACAAACAAGAGTCGATGTAGCGTAGGTAATATGCCACAAGGAAGGCAAGATTGGAGTTATAACATCAATGAGATTGACCCCTCTATCATCAATGAATTACCACCAGAAATTCAGCAAGAGTTTCAAATCTGGCTTAGGCCGCATAAGCGGCCTAATGTGGCTAAACGAGGTTCTAGTATTACTCACTATTTCTCACCTGACAAAAGTAGATAA

Predicted protein sequences of Glyma08g09400

Limit To All Plant Sequences

>Glyma08g09400.1   sequence type=predicted peptide   gene model=Glyma08g09400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPVARRETCDGRVIAHVDMDCFYVQVEQRKQPNLRGLPSAVIQYNSYKGGALIAVSYEARRCGVKRSMRGDEAKEACPQIQLVQVPVARGKADLNSYRNAGSEVVSVLSQKGRCERASIDEVYLDLTHAAETMLMETPLDSMQDFEDEVLKSHVLGLEIKDGSDAKDEVRKWLCRSDASYQDKLLACGALIVCDLRMKVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPQSSVEGLLASLPIKKMKHLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQQWYGINTGTWLWNIARGISGEEVEGRLLPKSHGSGKTFPGPQALKTVDSVQHWLNQLCEELNERLHSDLDQNKRIAQTLTLHARAYKTGDSDSHRKFPSKSCPLRYGTRKIQEDALILFQAGLRDFLGFYNCKAHGNENNNWGVTSLSVSASKLVSIPSGTHSIVKYFGGSFPSSSTSNQSLDVVIDEAAPSSPSGSGNCSGLVPNEFELEYPEDTGMKDSKACLDQQDPLCHLSCKADGLTEESSLVSPSGSEDRILHNEPHRDLPATDLRRVSNISSLKAVGKKKTAGKKLQGNCSIVHFFNNYHNSQSSLEQKNVKISSSLGSHSADNSHSTCIQVEMPAEHPHEEFDTNKSRCSVGNMPQGRQDWSYNINEIDPSIINELPPEIQQEFQIWLRPHKRPNVAKRGSSITHYFSPDKSR*

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