SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G39080 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr2:16309981-16312475 REVERSE LENGTH=351 | SoyBase | E_val: 4.00E-136 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF69 | Panther | SUGAR DEHYDRATASE-RELATED | JGI | ISS | |
| UniRef100_I1KRK4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRK4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q67YQ9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MRNA, complete cds, clone: RAFL24-13-K22 n=2 Tax=Arabidopsis thaliana RepID=Q67YQ9_ARATH | SoyBase | E_val: 7.00E-133 | ISS |
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Glyma08g09366 not represented in the dataset |
Glyma08g09366 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g26450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g088600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g09366.2 sequence type=transcript gene model=Glyma08g09366 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCAACTAATCAATTAGTTTCACAGAGACGCTCTCTTATCTCCAATCTGCCATTGTGTAATGCGCTGTGTGCATTTCAATTCAATCCATAAAATCCCAAAAACATTGACAGCAAGACCAAGTCAACCACCTCTCCCAGTTGCAGACTTGAGTTCCATATGATGGGAACCGCATGTTTCCCAACTAATAACGTTGTTCTCAAACCTCAAAACTTATCTGGGAATTTCTCTACCCTCTGTGATAACGTTCGGTGTCTGAGGTTCCTCACTCCCAAACCGCCCCACCTGCGATCCTCTCACTCTAACTTGGGAAATAGAGCACAGTTGACATCTTTTTCGATGTCCAAGGCAACCCAATTGAAGGTTTCGCAAGATGCACTCTCATCCACGGAACAATCACTGTCTTCATCTCCTCGGGTAATAGGAGAACATGACTTGCTCATTGTGGGTCCCGGGGTTCTTGGTCGTTTGGTTGCTCAGAAATGGCGTCAGGAAATTCCGGGTAGTCAAGTTTATGGTCAGACAGTGAGCACTGATCATCACAATGAGTTGATTCAAATGGGTATTAACCCGTCTAAGAAATGGACAGAGGCTACTCACACATTTCCCAATGTCATTTATTGTGCTCCACCTTCTCGTACCCCAGACTATGCTGGCAATGTCAGGCTAGCTGCATTAAGCTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAGGATTCTCCGGTTGTGCCTATCGGGAGGAGCCCCGGAGTTGATGTCCTTCTAAAAGCCGAAAATGTGGTACTGGAGTTTGGTGGCTGTGTTCTAAGATTGGCAGGACTATATAAAGCAGATAGAGGTGCACACAATTACTACTTGGAAAAGCGTATTGTTGATAGTCGTCCTGATCACGTCCTGAATCTTATACATTATGAGTAGTGGTGCTTATGATGGGGATAAAATTGGTGCTAATTTTGGCATGCTTCCACACCAGGATGCAGCTTCCCTCTCAGTTGCAATCTTGAAGAAAAAATTCCGTGGGCAGATTTTCTTGGGTTGTGATAATCATCCTTTGTCTAGGCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTGGAACTGATGGCCCTCTAGGAAAGAGATTAAACAACACAAAAACCTGCCAGGTAGTTGGGTGGAAGCCCAAGTACCCTAGCTTTATTCATTTTCTAGAGAGCAGCATGTGACAGACTCCTGACTTTATCTTTTGTTGTTCAATCTAATTAATTTGGAAACCACAATAGTGACCATGCATAGGTGCCTTAGGGAATTCTTGCTGTACATGGAGAGTTCATACTCACCTGAACTCAGCAGTGTGTACATTTTCCTATTTCTTCATATCTGACATTGTCAATAAGGATGATCAGTTATTGAATTGTCTTAAAACACTGTTCTGATACACTTTCATGTACACACTTACGAGAGACTTCAGTTCTTTTTATAAATAAAATCAATTCTCTTATGAGAGACTTGTACTTCAGTTCTTTTAAAGTGAATGGGCTTT >Glyma08g09366.3 sequence type=transcript gene model=Glyma08g09366 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCAACTAATCAATTAGTTTCACAGAGACGCTCTCTTATCTCCAATCTGCCATTGTGTAATGCGCTGTGTGCATTTCAATTCAATCCATAAAATCCCAAAAACATTGACAGCAAGACCAAGTCAACCACCTCTCCCAGTTGCAGACTTGAGTTCCATATGATGGGAACCGCATGTTTCCCAACTAATAACGTTGTTCTCAAACCTCAAAACTTATCTGGGAATTTCTCTACCCTCTGTGATAACGTTCGGTGTCTGAGGTTCCTCACTCCCAAACCGCCCCACCTGCGATCCTCTCACTCTAACTTGGGAAATAGAGCACAGTTGACATCTTTTTCGATGTCCAAGGCAACCCAATTGAAGGTTTCGCAAGATGCACTCTCATCCACGGAACAATCACTGTCTTCATCTCCTCGGGTAATAGGAGAACATGACTTGCTCATTGTGGGTCCCGGGGTTCTTGGTCGTTTGGTTGCTCAGAAATGGCGTCAGGAAATTCCGGGTAGTCAAGTTTATGGTCAGACAGTGAGCACTGATCATCACAATGAGTTGATTCAAATGGGTATTAACCCGTCTAAGAAATGGACAGAGGCTACTCACACATTTCCCAATGTCATTTATTGTGCTCCACCTTCTCGTACCCCAGACTATGCTGGCAATGTCAGGCTAGCTGCATTAAGCTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAGGATTCTCCGGTTGTGCCTATCGGGAGGAGCCCCGGAGTTGATGTCCTTCTAAAAGCCGAAAATGTGGTACTGGAGTTTGGTGGCTGTGTTCTAAGATTGGCAGGACTATATATATCCTTGGTTGGATGCAAATTATTAGGATCACAAAATATTGTTTTTTACTTGTGATCATTGCCACTATGCTTT
>Glyma08g09366.1 sequence type=CDS gene model=Glyma08g09366 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGGAACCGCATGTTTCCCAACTAATAACGTTGTTCTCAAACCTCAAAACTTATCTGGGAATTTCTCTACCCTCTGTGATAACGTTCGGTGTCTGAGGTTCCTCACTCCCAAACCGCCCCACCTGCGATCCTCTCACTCTAACTTGGGAAATAGAGCACAGTTGACATCTTTTTCGATGTCCAAGGCAACCCAATTGAAGGTTTCGCAAGATGCACTCTCATCCACGGAACAATCACTGTCTTCATCTCCTCGGGTAATAGGAGAACATGACTTGCTCATTGTGGGTCCCGGGGTTCTTGGTCGTTTGGTTGCTCAGAAATGGCGTCAGGAAATTCCGGGTAGTCAAGTTTATGGTCAGACAGTGAGCACTGATCATCACAATGAGTTGATTCAAATGGGTATTAACCCGTCTAAGAAATGGACAGAGGCTACTCACACATTTCCCAATGTCATTTATTGTGCTCCACCTTCTCGTACCCCAGACTATGCTGGCAATGTCAGGCTAGCTGCATTAAGCTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAGGATTCTCCGGTTGTGCCTATCGGGAGGAGCCCCGGAGTTGATGTCCTTCTAAAAGCCGAAAATGTGGTACTGGAGTTTGGTGGCTGTGTTCTAAGATTGGCAGGACTATATAAAGCAGATAGAGGTGCACACAATTACTACTTGGAAAAGCGTATTGTTGATAGTCGTCCTGATCACGTCCTGAATCTTATACATTATGAGGATGCAGCTTCCCTCTCAGTTGCAATCTTGAAGAAAAAATTCCGTGGGCAGATTTTCTTGGGTTGTGATAATCATCCTTTGTCTAGGCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTGGAACTGATGGCCCTCTAGGAAAGAGATTAAACAACACAAAAACCTGCCAGGTAGTTGGGTGGAAGCCCAAGTACCCTAGCTTTATTCATTTTCTAGAGAGCAGCATGTGA >Glyma08g09366.2 sequence type=CDS gene model=Glyma08g09366 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGGAACCGCATGTTTCCCAACTAATAACGTTGTTCTCAAACCTCAAAACTTATCTGGGAATTTCTCTACCCTCTGTGATAACGTTCGGTGTCTGAGGTTCCTCACTCCCAAACCGCCCCACCTGCGATCCTCTCACTCTAACTTGGGAAATAGAGCACAGTTGACATCTTTTTCGATGTCCAAGGCAACCCAATTGAAGGTTTCGCAAGATGCACTCTCATCCACGGAACAATCACTGTCTTCATCTCCTCGGGTAATAGGAGAACATGACTTGCTCATTGTGGGTCCCGGGGTTCTTGGTCGTTTGGTTGCTCAGAAATGGCGTCAGGAAATTCCGGGTAGTCAAGTTTATGGTCAGACAGTGAGCACTGATCATCACAATGAGTTGATTCAAATGGGTATTAACCCGTCTAAGAAATGGACAGAGGCTACTCACACATTTCCCAATGTCATTTATTGTGCTCCACCTTCTCGTACCCCAGACTATGCTGGCAATGTCAGGCTAGCTGCATTAAGCTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAGGATTCTCCGGTTGTGCCTATCGGGAGGAGCCCCGGAGTTGATGTCCTTCTAAAAGCCGAAAATGTGGTACTGGAGTTTGGTGGCTGTGTTCTAAGATTGGCAGGACTATATAAAGCAGATAGAGGTGCACACAATTACTACTTGGAAAAGCGTATTGTTGATAGTCGTCCTGATCACGTCCTGAATCTTATACATTATGAGTAG >Glyma08g09366.3 sequence type=CDS gene model=Glyma08g09366 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGGAACCGCATGTTTCCCAACTAATAACGTTGTTCTCAAACCTCAAAACTTATCTGGGAATTTCTCTACCCTCTGTGATAACGTTCGGTGTCTGAGGTTCCTCACTCCCAAACCGCCCCACCTGCGATCCTCTCACTCTAACTTGGGAAATAGAGCACAGTTGACATCTTTTTCGATGTCCAAGGCAACCCAATTGAAGGTTTCGCAAGATGCACTCTCATCCACGGAACAATCACTGTCTTCATCTCCTCGGGTAATAGGAGAACATGACTTGCTCATTGTGGGTCCCGGGGTTCTTGGTCGTTTGGTTGCTCAGAAATGGCGTCAGGAAATTCCGGGTAGTCAAGTTTATGGTCAGACAGTGAGCACTGATCATCACAATGAGTTGATTCAAATGGGTATTAACCCGTCTAAGAAATGGACAGAGGCTACTCACACATTTCCCAATGTCATTTATTGTGCTCCACCTTCTCGTACCCCAGACTATGCTGGCAATGTCAGGCTAGCTGCATTAAGCTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAGGATTCTCCGGTTGTGCCTATCGGGAGGAGCCCCGGAGTTGATGTCCTTCTAAAAGCCGAAAATGTGGTACTGGAGTTTGGTGGCTGTGTTCTAAGATTGGCAGGACTATATATATCCTTGGTTGGATGCAAATTATTAGGATCACAAAATATTGTTTTTTACTTGTGA
>Glyma08g09366.1 sequence type=predicted peptide gene model=Glyma08g09366 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMGTACFPTNNVVLKPQNLSGNFSTLCDNVRCLRFLTPKPPHLRSSHSNLGNRAQLTSFSMSKATQLKVSQDALSSTEQSLSSSPRVIGEHDLLIVGPGVLGRLVAQKWRQEIPGSQVYGQTVSTDHHNELIQMGINPSKKWTEATHTFPNVIYCAPPSRTPDYAGNVRLAALSWNGEGSFLFTSSSAPYDCNDNGPCDEDSPVVPIGRSPGVDVLLKAENVVLEFGGCVLRLAGLYKADRGAHNYYLEKRIVDSRPDHVLNLIHYEDAASLSVAILKKKFRGQIFLGCDNHPLSRQEMMDLVNKSGKFSKKFDEFTGTDGPLGKRLNNTKTCQVVGWKPKYPSFIHFLESSM* >Glyma08g09366.2 sequence type=predicted peptide gene model=Glyma08g09366 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMGTACFPTNNVVLKPQNLSGNFSTLCDNVRCLRFLTPKPPHLRSSHSNLGNRAQLTSFSMSKATQLKVSQDALSSTEQSLSSSPRVIGEHDLLIVGPGVLGRLVAQKWRQEIPGSQVYGQTVSTDHHNELIQMGINPSKKWTEATHTFPNVIYCAPPSRTPDYAGNVRLAALSWNGEGSFLFTSSSAPYDCNDNGPCDEDSPVVPIGRSPGVDVLLKAENVVLEFGGCVLRLAGLYKADRGAHNYYLEKRIVDSRPDHVLNLIHYE* >Glyma08g09366.3 sequence type=predicted peptide gene model=Glyma08g09366 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMGTACFPTNNVVLKPQNLSGNFSTLCDNVRCLRFLTPKPPHLRSSHSNLGNRAQLTSFSMSKATQLKVSQDALSSTEQSLSSSPRVIGEHDLLIVGPGVLGRLVAQKWRQEIPGSQVYGQTVSTDHHNELIQMGINPSKKWTEATHTFPNVIYCAPPSRTPDYAGNVRLAALSWNGEGSFLFTSSSAPYDCNDNGPCDEDSPVVPIGRSPGVDVLLKAENVVLEFGGCVLRLAGLYISLVGCKLLGSQNIVFYL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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