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Report for Sequence Feature Glyma08g09360

Feature Type:gene_model
Chromosome:Gm08
Start:6689297
stop:6692828
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g09360
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G01220AT Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferase family protein | chr4:513431-515648 REVERSE LENGTH=360 SoyBaseE_val: 4.00E-180ISS
GO:0010306GO-bp Annotation by Michelle Graham. GO Biological Process: rhamnogalacturonan II biosynthetic process SoyBaseN/AISS
GO:0048868GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube development SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0042285GO-mf Annotation by Michelle Graham. GO Molecular Function: xylosyltransferase activity SoyBaseN/AISS
PTHR10994Panther RETICULON/NOGO JGI ISS
PTHR10994:SF4Panther UNCHARACTERIZED JGI ISS
PF03407PFAM Nucleotide-diphospho-sugar transferase JGI ISS
UniRef100_G8A1U6UniRef Annotation by Michelle Graham. Most informative UniRef hit: UDP-galactose:fucoside alpha-3-galactosyltransferase n=1 Tax=Medicago truncatula RepID=G8A1U6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KRK3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRK3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g09360
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g09360 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g088500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g09360
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g09360
>Glyma08g09360.1   sequence type=CDS   gene model=Glyma08g09360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCGTTTCTGCACCAGAGAAGCAGTCTCCAGAACCCATTCTCGAATCCATTCCCGGCATCAACTCCATCATCATCGAATTCGAAGAAATCCCTGTCCATCATGGGCCCCACCACCCTCCTAGCCCTAATCTCCCTCATAGTCATACTCGGCGTCTTCTGCCCCTGGGTGGGCTTTCCCCAGGGCTTCCCCTTCACTCCCACTCCCACTTCCAAATGGGCTCACTACACTTTAGAACAAGCGCTCTCCTTCGTCGCCAAAAACGGTTCCTCCGTCATCGTCTGCATTGTGAGCCAACCCTACTTGCCCTTCCTCAACAACTGGCTCATCAGCATTTCCATGCAGAAGCGCCAAGACATGGTCCTTGTCATCGCCGAGGACTACGCTTCTCTCGACAGGGTCAATCTGCTTTGGCCTGGCCACGCCGTCCTCATCCCTCCCGTCCTCGACGCCGAAGCTGCCCACAAGTTTGGTTCTCAGGGTTTCTTCAACTTTACAGCAAGGCGGCCAAGCCATCTGCTGAAGATTTTGGAGCTTGGATATAGTGTGATGTACAATGATGTTGATATGGTTTGGTTGGCAGATCCATTTCCTTATCTGCAAGGGAACCATGATGTGTACTTTACAGATGATATGACTGCAATTAAACCATTGAACCATTCTCATGATTTACCACCACCAGGAAAAAAGGGCCGTCCTTACATTTGTAGTTGCATGATTTTCCTCCGCCCTACCAATGGAGCAAAGCTAATTTTGAGAAAGTGGATTGAGGAACTTCAGATTCAACCCTGGTCTAAAACTGTGAAATCTAATGATCAGCCTGCTTTTAACTGGGCTTTAATGAAGAATGCTAAAGAGGTGGATTTGTACCTGCTTCCACAGGCAGCATTCCCTACAGGCGGATTATATTTCAAGAACAAGGCATGGGTTAAGGAAACTAAAGGAATGCATGTTATCATTCATAATAACTATATCGTTGGCTTTGAGAAGAAAATAAAGCGGTTCCGTGACTATGGTCTCTGGTTGGTGGATGATCATGCACATGAGTCCCCTCTAGGAGGATTATGA
Predicted protein sequences of Glyma08g09360
>Glyma08g09360.1   sequence type=predicted peptide   gene model=Glyma08g09360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSFLHQRSSLQNPFSNPFPASTPSSSNSKKSLSIMGPTTLLALISLIVILGVFCPWVGFPQGFPFTPTPTSKWAHYTLEQALSFVAKNGSSVIVCIVSQPYLPFLNNWLISISMQKRQDMVLVIAEDYASLDRVNLLWPGHAVLIPPVLDAEAAHKFGSQGFFNFTARRPSHLLKILELGYSVMYNDVDMVWLADPFPYLQGNHDVYFTDDMTAIKPLNHSHDLPPPGKKGRPYICSCMIFLRPTNGAKLILRKWIEELQIQPWSKTVKSNDQPAFNWALMKNAKEVDLYLLPQAAFPTGGLYFKNKAWVKETKGMHVIIHNNYIVGFEKKIKRFRDYGLWLVDDHAHESPLGGL*






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