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Report for Sequence Feature Glyma08g09320

Feature Type:gene_model
Chromosome:Gm08
Start:6669148
stop:6670169
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g09320
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G05280AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr5:1565509-1566039 REVERSE LENGTH=176 SoyBaseE_val: 9.00E-34ISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1493 KOG Anaphase-promoting complex (APC), subunit 11 JGI ISS
PTHR22764Panther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_G7INF2UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL2A n=1 Tax=Medicago truncatula RepID=G7INF2_MEDTR SoyBaseE_val: 3.00E-62ISS
UniRef100_UPI00023392B4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023392B4 related cluster n=1 Tax=unknown RepID=UPI00023392B4 SoyBaseE_val: 5.00E-119ISS

Expression Patterns of Glyma08g09320
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g09320 not represented in the dataset
Glyma08g09320 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09320
ParalogEvidenceComments
Glyma05g26410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09320 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g088100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g09320
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g09320
>Glyma08g09320.1   sequence type=CDS   gene model=Glyma08g09320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAACTCCATCACCCTCTGAGTCTCCCACAGCCTCCTTTGGCCCCATCATAAGTAATGGCCAAGTTGGTGGCTTCGATTGGATTGTCCTTGTGGCAGCAATTTTATGTGCCTTTGTGTGTGCTCTTGGCCTCAACACAATGTTACAATGTGTGTTTCAATGTGCTTGTCGTGTCCTCACAGAGCCTCGCCAATGGATTGCTTCACGAAGGCTCAACTCTGGCCTCAAGAAAAAGGAAATGGTGGCTTTGCCAACCTCAACTTACACTACTACACACTCTGCTGCTGCCTCTTCTTCTTCTTCACCTAATTCTAGTAGTTGTGTCATTTGCTTGGCTGAGTTCTCTGATGGGGACCCTATAAGGTTCCTTCCAAAGTGCAACCACTATTTCCATGTGGTTTGCATTGACAAGTGGCTACTCTCTCACTCTTCTTGCCCTACTTGCAGGCACCTCCTCAAGTCAAATGATTCTCTTCACTCCTTACATATTGTCATAGCTTAG
Predicted protein sequences of Glyma08g09320
>Glyma08g09320.1   sequence type=predicted peptide   gene model=Glyma08g09320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAETPSPSESPTASFGPIISNGQVGGFDWIVLVAAILCAFVCALGLNTMLQCVFQCACRVLTEPRQWIASRRLNSGLKKKEMVALPTSTYTTTHSAAASSSSSPNSSSCVICLAEFSDGDPIRFLPKCNHYFHVVCIDKWLLSHSSCPTCRHLLKSNDSLHSLHIVIA*






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