Glyma08g09300 - SoyBase

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Report for Sequence Feature Glyma08g09300

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6656506
stop:	6662259
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48100	AT	Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein \| chr1:17766921-17769625 FORWARD LENGTH=475	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004650	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity	SoyBase	N/A	ISS
PF00295	PFAM	Glycosyl hydrolases family 28	JGI		ISS
UniRef100_B9RZX1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RZX1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KRJ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRJ6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g09300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09300

Paralog	Evidence	Comments
Glyma05g26390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g087900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g09300

Limit To All Plant Sequences

>Glyma08g09300.3   sequence type=transcript   gene model=Glyma08g09300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACAATTCCACTTTCTCTGTCCAAATCTTACCCTCTATAAAACCCTCTTCACACTCATCAAGTTTCACTGATCATTCTTTTTGCACCACAATTTGCTTACTTACACTAGTCACATATTACACGTCGATCAACTCCATTGCCTTTTGCATGGTCACAGAAACTTCCCGAATTCACAAAGTTTAGAGGGAAAAAAAAATACTCATAATCAGAAACAACTTATCAGCATTTTGTGGTCCTTTCCACATTGGCACATTCACAAGAGTGAAAAATTCAAGGACTTTAACCCCTCATGGATCTCATTCGTGTGTTTTTCACTCTATGGTTTACTTTGATACTTTTGAACCATAATTTTGGAAATGTGGAGGGAAGATACCACCATCACACCAAGCAGAAGAAAGTTTCCACTGCTCCTAATGATTCTTCTGATTCTCCAAGTGTTCCTTCCGACCCTTCAGCTTCACCACCTTCTAATTCTCCTAGTCCTTCTAATTCTCCCAGTGTTCCTTCTGACCCTTATCCAAATGATAACCAAACTTCCTCTTCTGACTGTGTTTTCGATGTGAGATCCTTTGGGGCTGTTGGAGATGGCTGTGCTGATGACACACGTGCATTCAGAGCAGCATGGAAAGCAGCATGTGCTGTGGACTCTGGGATTGTTCTTGCTCCAGAAAACTACAGCTTTAAAATCACTTCAACTATTTTTTCAGGTCCATGCAAGCCAGGATTGGTATTCCAAGTGGATGGAACACTAATGGCACCAGATGGACCAAATTCGTGGCCAGAAGCAGATAGCCGCAATCAATGGCTTGTATTTTATCGACTTGACCAAATGACTCTTAATGGTACAGGAACCATTGAAGGGAATGGAGACAAATGGTGGGATCTCCCCTGCAAGCCTCACAGGGGTCCCAATGGAAAAACTTTGTCAGGGCCATGTGGTAGTCCTGCTATGATACGGTTCTTCATGAGCTCCAATTTGAAGGTGAAGGGGTTGAAAATTCAAAACAGTCCTCAGTTCCACATGATATTCAATGGCTGCCAAGGAGTACTGATCGATAAGCTCTCCATTTCTTCACCAAAACTCAGCCCCAACACCGATGGAATCCATGTAGAAAATTCCAAATATGTTGGGATATATAATTCCATGATAAGCAATGGTGACGATTGCATTTCAATTGGACCCGGGTCCTCAAACGTGGACATAGCTGGTTTAACTTGTGGTCCTAGCCACGGGATTAGCATAGGAAGCCTTGGAGTGCACAACTCCCAGGCATGTGTGTCCAACTTAACTGTCCGTGACAGCATCATAAGGGAATCAGACAACGGACTCAGAATCAAGACATGGCAAGGTGGAATGGGATCAGTGTCAAGTCTGAGATTCGAGAACATCCAAATGGAGAACGTTGGAAACTGCATCATAATAGACCAATACTACTGTTTGTCAAAGGAATGTCTAAACCAGACTTCAGCTGTGCATGTGAATGATGTGTCCTACAGCAACATAAAGGGAACCTACGATGTGAGAACTGCTCCTATTCACTTTGCTTGCAGTGACACTGTTGCCTGCACAAACATAACACTCTCTGAGGTTGAGCTTTTGCCATTCGAAGGAGCATTGCTGGATGACCCTTTTTGCTGGAATGCTTATGGGACACAAGAGACCTTGACTATACCTCCAATTAATTGCTTAAGGGAGGGTGACCCTGAAACAGTGGGCGATCTTTCTGAATATCAATGCAGTTAATTAAACATGTGTTGCATTAATTTTGGTACCTTATATAGATAGAAATAGAAAATCTATTATATAGTATTATATATCATATATATACTACACGTATAGAGTTTAGATATATATCCATTATTATTATGTGTTGTTGATGATTGCGGTCCTCTATAAATTATCTTTTAGGATTCGTCCCTATTTGGGTGTATTATTCCCATATTGTGCGATGAGATGCAGAAATCGGTCCCTTTTTGGGCCTACACTGTAATAGCTAGCTTGATTGAACATTTATATATTATATGGCTAAAATTATATACCATTTTTGT

Coding sequences of Glyma08g09300

Limit To All Plant Sequences

>Glyma08g09300.2   sequence type=CDS   gene model=Glyma08g09300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTCATTCGTGTGTTTTTCACTCTATGGTTTACTTTGATACTTTTGAACCATAATTTTGGAAATGTGGAGGGAAGATACCACCATCACACCAAGCAGAAGAAAGTTTCCACTGCTCCTAATGATTCTTCTGATTCTCCAAGTGTTCCTTCCGACCCTTCAGCTTCACCACCTTCTAATTCTCCTAGTCCTTCTAATTCTCCCAGTGTTCCTTCTGACCCTTATCCAAATGATAACCAAACTTCCTCTTCTGACTGTGTTTTCGATGTGAGATCCTTTGGGGCTGTTGGAGATGGCTGTGCTGATGACACACGTGCATTCAGAGCAGCATGGAAAGCAGCATGTGCTGTGGACTCTGGGATTGTTCTTGCTCCAGAAAACTACAGCTTTAAAATCACTTCAACTATTTTTTCAGGTCCATGCAAGCCAGGATTGGTATTCCAAGTGGATGGAACACTAATGGCACCAGATGGACCAAATTCGTGGCCAGAAGCAGATAGCCGCAATCAATGGCTTGTATTTTATCGACTTGACCAAATGACTCTTAATGGTACAGGAACCATTGAAGGGAATGGAGACAAATGGTGGGATCTCCCCTGCAAGCCTCACAGGGGTCCCAATGGAAAAACTTTGTCAGGGCCATGTGGTAGTCCTGCTATGATACGGTTCTTCATGAGCTCCAATTTGAAGGTGAAGGGGTTGAAAATTCAAAACAGTCCTCAGTTCCACATGATATTCAATGGCTGCCAAGGAGTACTGATCGATAAGCTCTCCATTTCTTCACCAAAACTCAGCCCCAACACCGATGGAATCCATGTAGAAAATTCCAAATATGTTGGGATATATAATTCCATGATAAGCAATGGTGACGATTGCATTTCAATTGGACCCGGGTCCTCAAACGTGGACATAGCTGGTTTAACTTGTGGTCCTAGCCACGGGATTAGCATAGGAAGCCTTGGAGTGCACAACTCCCAGGCATGTGTGTCCAACTTAACTGTCCGTGACAGCATCATAAGGGAATCAGACAACGGACTCAGAATCAAGACATGGCAAGGTGGAATGGGATCAGTGTCAAGTCTGAGATTCGAGAACATCCAAATGGAGAACGTTGGAAACTGCATCATAATAGACCAATACTACTGTTTGTCAAAGGAATGTCTAAACCAGACTTCAGCTGTGCATGTGAATGATGTGTCCTACAGCAACATAAAGGGAACCTACGATGTGAGAACTGCTCCTATTCACTTTGCTTGCAGTGACACTGTTGCCTGCACAAACATAACACTCTCTGAGGTTGAGCTTTTGCCATTCGAAGGAGCATTGCTGGATGACCCTTTTTGCTGGAATGCTTATGGGACACAAGAGACCTTGACTATACCTCCAATTAATTGCTTAAGGGAGGGTGACCCTGAAACAGTGGGCGATCTTTCTGAATATCAATGCAGTTAA

>Glyma08g09300.3   sequence type=CDS   gene model=Glyma08g09300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTCATTCGTGTGTTTTTCACTCTATGGTTTACTTTGATACTTTTGAACCATAATTTTGGAAATGTGGAGGGAAGATACCACCATCACACCAAGCAGAAGAAAGTTTCCACTGCTCCTAATGATTCTTCTGATTCTCCAAGTGTTCCTTCCGACCCTTCAGCTTCACCACCTTCTAATTCTCCTAGTCCTTCTAATTCTCCCAGTGTTCCTTCTGACCCTTATCCAAATGATAACCAAACTTCCTCTTCTGACTGTGTTTTCGATGTGAGATCCTTTGGGGCTGTTGGAGATGGCTGTGCTGATGACACACGTGCATTCAGAGCAGCATGGAAAGCAGCATGTGCTGTGGACTCTGGGATTGTTCTTGCTCCAGAAAACTACAGCTTTAAAATCACTTCAACTATTTTTTCAGGTCCATGCAAGCCAGGATTGGTATTCCAAGTGGATGGAACACTAATGGCACCAGATGGACCAAATTCGTGGCCAGAAGCAGATAGCCGCAATCAATGGCTTGTATTTTATCGACTTGACCAAATGACTCTTAATGGTACAGGAACCATTGAAGGGAATGGAGACAAATGGTGGGATCTCCCCTGCAAGCCTCACAGGGGTCCCAATGGAAAAACTTTGTCAGGGCCATGTGGTAGTCCTGCTATGATACGGTTCTTCATGAGCTCCAATTTGAAGGTGAAGGGGTTGAAAATTCAAAACAGTCCTCAGTTCCACATGATATTCAATGGCTGCCAAGGAGTACTGATCGATAAGCTCTCCATTTCTTCACCAAAACTCAGCCCCAACACCGATGGAATCCATGTAGAAAATTCCAAATATGTTGGGATATATAATTCCATGATAAGCAATGGTGACGATTGCATTTCAATTGGACCCGGGTCCTCAAACGTGGACATAGCTGGTTTAACTTGTGGTCCTAGCCACGGGATTAGCATAGGAAGCCTTGGAGTGCACAACTCCCAGGCATGTGTGTCCAACTTAACTGTCCGTGACAGCATCATAAGGGAATCAGACAACGGACTCAGAATCAAGACATGGCAAGGTGGAATGGGATCAGTGTCAAGTCTGAGATTCGAGAACATCCAAATGGAGAACGTTGGAAACTGCATCATAATAGACCAATACTACTGTTTGTCAAAGGAATGTCTAAACCAGACTTCAGCTGTGCATGTGAATGATGTGTCCTACAGCAACATAAAGGGAACCTACGATGTGAGAACTGCTCCTATTCACTTTGCTTGCAGTGACACTGTTGCCTGCACAAACATAACACTCTCTGAGGTTGAGCTTTTGCCATTCGAAGGAGCATTGCTGGATGACCCTTTTTGCTGGAATGCTTATGGGACACAAGAGACCTTGACTATACCTCCAATTAATTGCTTAAGGGAGGGTGACCCTGAAACAGTGGGCGATCTTTCTGAATATCAATGCAGTTAA

Predicted protein sequences of Glyma08g09300

Limit To All Plant Sequences

>Glyma08g09300.2   sequence type=predicted peptide   gene model=Glyma08g09300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLIRVFFTLWFTLILLNHNFGNVEGRYHHHTKQKKVSTAPNDSSDSPSVPSDPSASPPSNSPSPSNSPSVPSDPYPNDNQTSSSDCVFDVRSFGAVGDGCADDTRAFRAAWKAACAVDSGIVLAPENYSFKITSTIFSGPCKPGLVFQVDGTLMAPDGPNSWPEADSRNQWLVFYRLDQMTLNGTGTIEGNGDKWWDLPCKPHRGPNGKTLSGPCGSPAMIRFFMSSNLKVKGLKIQNSPQFHMIFNGCQGVLIDKLSISSPKLSPNTDGIHVENSKYVGIYNSMISNGDDCISIGPGSSNVDIAGLTCGPSHGISIGSLGVHNSQACVSNLTVRDSIIRESDNGLRIKTWQGGMGSVSSLRFENIQMENVGNCIIIDQYYCLSKECLNQTSAVHVNDVSYSNIKGTYDVRTAPIHFACSDTVACTNITLSEVELLPFEGALLDDPFCWNAYGTQETLTIPPINCLREGDPETVGDLSEYQCS*

>Glyma08g09300.3   sequence type=predicted peptide   gene model=Glyma08g09300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLIRVFFTLWFTLILLNHNFGNVEGRYHHHTKQKKVSTAPNDSSDSPSVPSDPSASPPSNSPSPSNSPSVPSDPYPNDNQTSSSDCVFDVRSFGAVGDGCADDTRAFRAAWKAACAVDSGIVLAPENYSFKITSTIFSGPCKPGLVFQVDGTLMAPDGPNSWPEADSRNQWLVFYRLDQMTLNGTGTIEGNGDKWWDLPCKPHRGPNGKTLSGPCGSPAMIRFFMSSNLKVKGLKIQNSPQFHMIFNGCQGVLIDKLSISSPKLSPNTDGIHVENSKYVGIYNSMISNGDDCISIGPGSSNVDIAGLTCGPSHGISIGSLGVHNSQACVSNLTVRDSIIRESDNGLRIKTWQGGMGSVSSLRFENIQMENVGNCIIIDQYYCLSKECLNQTSAVHVNDVSYSNIKGTYDVRTAPIHFACSDTVACTNITLSEVELLPFEGALLDDPFCWNAYGTQETLTIPPINCLREGDPETVGDLSEYQCS*

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