Glyma08g09260 - SoyBase

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Report for Sequence Feature Glyma08g09260

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6616124
stop:	6621405
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44050	AT	Annotation by Michelle Graham. TAIR10: 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase \| chr2:18224304-18225917 FORWARD LENGTH=227	SoyBase	E_val: 3.00E-99	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0009231	GO-bp	Annotation by Michelle Graham. GO Biological Process: riboflavin biosynthetic process	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009349	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: riboflavin synthase complex	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0000906	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 6,7-dimethyl-8-ribityllumazine synthase activity	SoyBase	N/A	ISS
KOG3243	KOG	6,7-dimethyl-8-ribityllumazine synthase	JGI		ISS
PTHR21058	Panther	6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE (DMRL SYNTHASE) (LUMAZINE SYNTHASE)	JGI		ISS
PF00885	PFAM	6,7-dimethyl-8-ribityllumazine synthase	JGI		ISS
UniRef100_I1KRJ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Glycine max RepID=I1KRJ0_SOYBN	SoyBase	E_val: 3.00E-166	ISS
UniRef100_I1KRJ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: 6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Glycine max RepID=I1KRJ0_SOYBN	SoyBase	E_val: 3.00E-166	ISS

Expression Patterns of Glyma08g09260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g09260 not represented in the dataset	Glyma08g09260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09260

Paralog	Evidence	Comments
Glyma05g26350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g087500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g09260

Limit To All Plant Sequences

>Glyma08g09260.5   sequence type=transcript   gene model=Glyma08g09260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCTTTCCATATAAAAAAAATTATAAACTCACGTGACACTACCAGAGCCATATGCACGTGAGATATTTTTTAACGAAAAGCAATAAGCAAGGCCACCCGAACCAGTGAACCCTAAACGCCGTCGACGCCGTGGCTGGAAGAATATGGCTTCATTTGTTTCTACCCACTGTATCCTTCCTAGCGGGGTTGGATTTGTGCATGACCAAGATCGTTCTTGTGGTAGAACTAACACTTTGCATCTTCAAAATGCTCCTAAAAGCCCTAGCTCTCTCTCCTTTTTGCTCTCCGTGCGAGAAAGTAGATCAGATGCCGTTGTTGTTCAGAGCAAGGGTCGATCGTCTTTTTCTCAAACAGCTGCTGTGAGGCATCTTACAGGTTCTGTTACCAGAGCCCATGGACTTCGTTTTGCTGTGGTTGTTGCTAGATTTAATGAAATTGTTACCAAACCGCTCTTGGAAGGTGCTTTGGGTACTTTCAATAATTATTCAGTTCAAGATGAGGATATCGATGTTGTGTGGGTACCTGGTAGTTTTGAAATTGGTGTTGTTGCAGAAAGGCTTGGAAAATCAGGCAAATATGATGCAATCGTATGCATAGGAGCTGTGGTACGAGGAGATACAACCCACTATGATGCAGTTGCTAATTCAGCAGCATCAGGAGTTCTTTCAGCCAGTCTAAACTCAGGTGTTCCATGCATATTTGGTGTCCTAACATGTGATGATATGGATCAGGCTCTAAATAGAGCTGGTGGAAAGTCTGGGAATAAGGGTGCTGAGGCTGCATTGACTGCTATTGAGATGGCATCTTTGTTCGAGCACCATCTGAAGTAGTCAGTGTTTTAACCAATCTCATAGAGCTTTTGTTGGAACGGCATGAATTCCCAATTTTCATCTCCAGACTGCTTTTGGTTGTAGTTCGAAATATATTCTTGTATGTTCTCAAACTATTAAGGCTATGTTTGAATATTTAATGGTGAGTGGAATAGAATGGAGTGGATGGTGGCAGAATTGAATGGAATAAATTAAAAATAAAAAGTTTCGTTCTATTTAGATATTTTATGATGGTACAGAATAAATTTCCATTCTATTACTTCATTGTATAATGATAATTTTATTATTCTTATCCCTTGTCATGAATAAGTATGTTTGTATCATTGGCTAATTCGGAAGTTTTATACGGATTGGGCTAATCTGAAAGCCTCATACGGATTGGCTTCTCA

>Glyma08g09260.6   sequence type=transcript   gene model=Glyma08g09260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCTTTCCATATAAAAAAAATTATAAACTCACGTGACACTACCAGAGCCATATGCACGTGAGATATTTTTTAACGAAAAGCAATAAGCAAGGCCACCCGAACCAGTGAACCCTAAACGCCGTCGACGCCGTGGCTGGAAGAATATGGCTTCATTTGTTTCTACCCACTGTATCCTTCCTAGCGGGGTTGGATTTGTGCATGACCAAGATCGTTCTTGTGGTAGAACTAACACTTTGCATCTTCAAAATGCTCCTAAAAGCCCTAGCTCTCTCTCCTTTTTGCTCTCCGTGCGAGAAAGTAGATCAGATGCCGTTGTTGTTCAGAGCAAGGGTCGATCGTCTTTTTCTCAAACAGCTGCTGTGAGGCATCTTACAGGTTCTGTTACCAGAGCCCATGGACTTCGTTTTGCTGTGGTTGTTGCTAGATTTAATGAAATTGTTACCAAACCGCTCTTGGAAGGTGCTTTGGGTACTTTCAATAATTATTCAGTTCAAGATGAGGATATCGATGTTGTGTGGGTACCTGGTAGTTTTGAAATTGGTGTTGTTGCAGAAAGGCTTGGAAAATCAGGCAAATATGATGCAATCGTATGCATAGGAGCTGTGGTACGAGGAGATACAACCCACTATGATGCAGTTGCTAATTCAGCAGCATCAGGAGTTCTTTCAGCCAGTCTAAACTCAGGTGTTCCATGCATATTTGGTGTCCTAACATGTGATGATATGGATCAGGCTCTAAATAGAGCTGGTGGAAAGTCTGGGAATAAGGGTGCTGAGGCTGCATTGACTGCTATTGAGATGGCATCTTTGTTCGAGCACCATCTGAAGTAGTCAGTGTTTTAACCAATCTCATAGAGCTTTTGTTGGAACGGCATGAATTCCCAATTTTCATCTCCAGACTGCTTTTGGTTGTAGTTCGAAATATATTCTTGTATGTTCTCAAACTATTAAGGCTATGTTTGAATATTTAATGGTGAGTGGAATAGAATGGAGTGGATGGTGGCAGAATTGAATGGAATAAATTAAAAATAAAAAGTTTCGTTCTATTTAGATATTTTATGATGGTACAGAATAAATTTCCATTCTATTACTTCATTGTATAATGATAATTTTATTATTCTTATCCCTTGTCATGAATAAGTATGTTTGTATCATTGGCTAATTCGGAAGTTTTATACGGATTGGGCTAATCTGAAAGCCTCATACGGATTGGCTTCTCA

Coding sequences of Glyma08g09260

Limit To All Plant Sequences

>Glyma08g09260.1   sequence type=CDS   gene model=Glyma08g09260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCATTTGTTTCTACCCACTGTATCCTTCCTAGCGGGGTTGGATTTGTGCATGACCAAGATCGTTCTTGTGGTAGAACTAACACTTTGCATCTTCAAAATGCTCCTAAAAGCCCTAGCTCTCTCTCCTTTTTGCTCTCCGTGCGAGCTTCAGAAAGTAGATCAGATGCCGTTGTTGTTCAGAGCAAGGGTCGATCGTCTTTTTCTCAAACAGCTGCTGTGAGGCATCTTACAGGTTCTGTTACCAGAGCCCATGGACTTCGTTTTGCTGTGGTTGTTGCTAGATTTAATGAAATTGTTACCAAACCGCTCTTGGAAGGTGCTTTGGGTACTTTCAATAATTATTCAGTTCAAGATGAGGATATCGATGTTGTGTGGGTACCTGGTAGTTTTGAAATTGGTGTTGTTGCAGAAAGGCTTGGAAAATCAGGCAAATATGATGCAATCGTATGCATAGGAGCTGTGGTACGAGGAGATACAACCCACTATGATGCAGTTGCTAATTCAGCAGCATCAGGAGTTCTTTCAGCCAGTCTAAACTCAGGTGTTCCATGCATATTTGGTGTCCTAACATGTGATGATATGGATCAGGCTCTAAATAGAGCTGGTGGAAAGTCTGGGAATAAGGGTGCTGAGGCTGCATTGACTGCTATTGAGATGGCATCTTTGTTCGAGCACCATCTGAAGTAG

>Glyma08g09260.5   sequence type=CDS   gene model=Glyma08g09260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCATTTGTTTCTACCCACTGTATCCTTCCTAGCGGGGTTGGATTTGTGCATGACCAAGATCGTTCTTGTGGTAGAACTAACACTTTGCATCTTCAAAATGCTCCTAAAAGCCCTAGCTCTCTCTCCTTTTTGCTCTCCGTGCGAGAAAGTAGATCAGATGCCGTTGTTGTTCAGAGCAAGGGTCGATCGTCTTTTTCTCAAACAGCTGCTGTGAGGCATCTTACAGGTTCTGTTACCAGAGCCCATGGACTTCGTTTTGCTGTGGTTGTTGCTAGATTTAATGAAATTGTTACCAAACCGCTCTTGGAAGGTGCTTTGGGTACTTTCAATAATTATTCAGTTCAAGATGAGGATATCGATGTTGTGTGGGTACCTGGTAGTTTTGAAATTGGTGTTGTTGCAGAAAGGCTTGGAAAATCAGGCAAATATGATGCAATCGTATGCATAGGAGCTGTGGTACGAGGAGATACAACCCACTATGATGCAGTTGCTAATTCAGCAGCATCAGGAGTTCTTTCAGCCAGTCTAAACTCAGGTGTTCCATGCATATTTGGTGTCCTAACATGTGATGATATGGATCAGGCTCTAAATAGAGCTGGTGGAAAGTCTGGGAATAAGGGTGCTGAGGCTGCATTGACTGCTATTGAGATGGCATCTTTGTTCGAGCACCATCTGAAGTAG

>Glyma08g09260.6   sequence type=CDS   gene model=Glyma08g09260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCATTTGTTTCTACCCACTGTATCCTTCCTAGCGGGGTTGGATTTGTGCATGACCAAGATCGTTCTTGTGGTAGAACTAACACTTTGCATCTTCAAAATGCTCCTAAAAGCCCTAGCTCTCTCTCCTTTTTGCTCTCCGTGCGAGAAAGTAGATCAGATGCCGTTGTTGTTCAGAGCAAGGGTCGATCGTCTTTTTCTCAAACAGCTGCTGTGAGGCATCTTACAGGTTCTGTTACCAGAGCCCATGGACTTCGTTTTGCTGTGGTTGTTGCTAGATTTAATGAAATTGTTACCAAACCGCTCTTGGAAGGTGCTTTGGGTACTTTCAATAATTATTCAGTTCAAGATGAGGATATCGATGTTGTGTGGGTACCTGGTAGTTTTGAAATTGGTGTTGTTGCAGAAAGGCTTGGAAAATCAGGCAAATATGATGCAATCGTATGCATAGGAGCTGTGGTACGAGGAGATACAACCCACTATGATGCAGTTGCTAATTCAGCAGCATCAGGAGTTCTTTCAGCCAGTCTAAACTCAGGTGTTCCATGCATATTTGGTGTCCTAACATGTGATGATATGGATCAGGCTCTAAATAGAGCTGGTGGAAAGTCTGGGAATAAGGGTGCTGAGGCTGCATTGACTGCTATTGAGATGGCATCTTTGTTCGAGCACCATCTGAAGTAG

Predicted protein sequences of Glyma08g09260

Limit To All Plant Sequences

>Glyma08g09260.1   sequence type=predicted peptide   gene model=Glyma08g09260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASFVSTHCILPSGVGFVHDQDRSCGRTNTLHLQNAPKSPSSLSFLLSVRASESRSDAVVVQSKGRSSFSQTAAVRHLTGSVTRAHGLRFAVVVARFNEIVTKPLLEGALGTFNNYSVQDEDIDVVWVPGSFEIGVVAERLGKSGKYDAIVCIGAVVRGDTTHYDAVANSAASGVLSASLNSGVPCIFGVLTCDDMDQALNRAGGKSGNKGAEAALTAIEMASLFEHHLK*

>Glyma08g09260.5   sequence type=predicted peptide   gene model=Glyma08g09260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASFVSTHCILPSGVGFVHDQDRSCGRTNTLHLQNAPKSPSSLSFLLSVRESRSDAVVVQSKGRSSFSQTAAVRHLTGSVTRAHGLRFAVVVARFNEIVTKPLLEGALGTFNNYSVQDEDIDVVWVPGSFEIGVVAERLGKSGKYDAIVCIGAVVRGDTTHYDAVANSAASGVLSASLNSGVPCIFGVLTCDDMDQALNRAGGKSGNKGAEAALTAIEMASLFEHHLK*

>Glyma08g09260.6   sequence type=predicted peptide   gene model=Glyma08g09260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASFVSTHCILPSGVGFVHDQDRSCGRTNTLHLQNAPKSPSSLSFLLSVRESRSDAVVVQSKGRSSFSQTAAVRHLTGSVTRAHGLRFAVVVARFNEIVTKPLLEGALGTFNNYSVQDEDIDVVWVPGSFEIGVVAERLGKSGKYDAIVCIGAVVRGDTTHYDAVANSAASGVLSASLNSGVPCIFGVLTCDDMDQALNRAGGKSGNKGAEAALTAIEMASLFEHHLK*

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