Glyma08g09250 - SoyBase

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Report for Sequence Feature Glyma08g09250

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6611764
stop:	6613087
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF05678	PFAM	VQ motif	JGI		ISS
UniRef100_I1KRI9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KRI9_SOYBN	SoyBase	E_val: 4.00E-162	ISS

Proteins Associated with Glyma08g09250

Locus	Gene Symbol	Protein Name
	VQ32	VQ motif containing protein gene 32

Expression Patterns of Glyma08g09250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09250

Paralog	Evidence	Comments
Glyma05g26340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g087400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g09250

Limit To All Plant Sequences

>Glyma08g09250.1   sequence type=CDS   gene model=Glyma08g09250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGCCACAGCTGATCAATGCATGCATGAGTTTTATCAACAACCTCTCATGGATGGCATGGCTATGGATCCATCCATAGAAGGACTCATGGATGCATCCATGTCATCATCATCAGAGGGCATGATCATGTTGAGCCCAAGCAATTCACACAACAACACAACAATTGGCCACCACAATTTAACTCCAAAGGGTTGTGCATTCAAACAAATCCGAAGGAGATCTAGAGCTTCTAAGAGCACTCCAATTACCCTTCTCAAGGCCAACACCTCCAATTTCAGGGCATTGGTACAACAATTCACTGGGTGTCCCACCACAACAGCCATGTCACTTGCAATCCATAAGGGTCCCGTTACCTTAAATTTCCAACAAGGTGGTAGCAAACAACATATTCATCATCATCACCACACAAAAATAACAACTAGAGGAGCAATGCCACCGTTTATTGGCACCATAAGTTCTAACCAAAACCAAGTTTCTGTGCCACTTCCAAAGCAACACTTGATGCAAGAGCAGCAAAGTGGACACTTTCTTCCAACTTCGTCGGGTAACTCTTATAGGCCAATTAATTGCATGGATGATGGATTGATCTTTGATAATGATTTTAGTTTACATGAGCTAACCGTGAATGCCATCTCCAATGATATCGATGATTTATTTATGTGA

Predicted protein sequences of Glyma08g09250

Limit To All Plant Sequences

>Glyma08g09250.1   sequence type=predicted peptide   gene model=Glyma08g09250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTATADQCMHEFYQQPLMDGMAMDPSIEGLMDASMSSSSEGMIMLSPSNSHNNTTIGHHNLTPKGCAFKQIRRRSRASKSTPITLLKANTSNFRALVQQFTGCPTTTAMSLAIHKGPVTLNFQQGGSKQHIHHHHHTKITTRGAMPPFIGTISSNQNQVSVPLPKQHLMQEQQSGHFLPTSSGNSYRPINCMDDGLIFDNDFSLHELTVNAISNDIDDLFM*

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