SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G44790 | AT | Annotation by Michelle Graham. TAIR10: copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) | chr5:18075846-18079817 REVERSE LENGTH=1001 | SoyBase | E_val: 0 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0000303 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to superoxide | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0006754 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process | SoyBase | N/A | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0006825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: copper ion transport | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0008219 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell death | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009755 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009873 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010119 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement | SoyBase | N/A | ISS |
| GO:0030001 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metal ion transport | SoyBase | N/A | ISS |
| GO:0046034 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP metabolic process | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0005375 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0015662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | SoyBase | N/A | ISS |
| GO:0043682 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper-transporting ATPase activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG0207 | KOG | Cation transport ATPase | JGI | ISS | |
| PTHR24093 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24093:SF39 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00122 | PFAM | E1-E2 ATPase | JGI | ISS | |
| PF00403 | PFAM | Heavy-metal-associated domain | JGI | ISS | |
| PF00702 | PFAM | haloacid dehalogenase-like hydrolase | JGI | ISS | |
| UniRef100_G7INF6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Copper-transporting ATPase RAN1 n=1 Tax=Medicago truncatula RepID=G7INF6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KRI8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRI8_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma08g09240 not represented in the dataset |
Glyma08g09240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g26330 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g087300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g09240.1 sequence type=CDS gene model=Glyma08g09240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCCGAGCACCGGAGACGTGCAACTAACTTCCCCCGGCGCCGGCCAAGATTTCGACGACCTCGAAGACATTCGCCTCCTCGACTCCTACGACAAAAACGACGTCGTCCACGATGAAACCAAACGGATTCAGGTCAGAATCTCCGGCATGACCTGCGCCGCCTGCTCCAACTCCGTCCAAACGGCTCTCCGGTCCGTTCACGGCGTCACCGAAGCCTCCGTCGCTCTTCTTCAGAACAAAGCCGAAGTCGTTTTCATCCCCGGCCTCGTCAAGGATGAGGATATTAAGAATGCGATTGAAGACGCAGGTTTCGAGGCCGAGATCTTGCCGGACTCCGGCGCGGCGGCGCACGCTGCCGCCTCCGCCGCCGTGTTGGGGCAGTTTACTATCGTCGGGATGACGTGTGCGGCGTGTGTGAATTCCGTGGAAGGCATTCTGAGAAACCTCAACGGAGTAAAAAGAGCGGTGGTGGCTCTGGCCACTTCGTTGGGCGAAGTTGAGTACGATCCCCACGTGATTAGCAAGGACGATATTGTGTCTGCGATTGAAGACGCGGGTTTCGAGGGCGCGTTTGTGCAGAGTAACGGGCGGGACCAGATAGTGTTAGGGGTGAGTGGCGTGTACTCTCTTGGTGATGCTCAGGTTCTGGAAGCGATGCTAAGTGGCACCAAAGGGGTGAGGCAGTTTCGGTTCGATACGGCAGTGAACGAGCTTGATGTGGTGTTTGACCCTGAAGTTATCAGCTCTAGGTCGTTGGTTGATGGGATCCAGTTGGGGAGTAATGGCAAGTTTAAGTTGCATGTTAGGAATCCTTACGCTAGGATGGCTTCTAAAGATGGCTCAGAAAGCTCGGCTATGTTTCGCCTTTTTATTTCCAGCTTGTTTCTCAGTATTCCTCTCTTCTTCATGGGGGTGATTTGTCCTCATATACCATTGGTTTACTCTTTATTACTTTGGAGATGTGGGCCTTTTCTCATGGGTGACTGGCTGAATTGGGCGTTGGTGAGTGTCATTCAATTTGTGATTGGGAAACGCTTCTATATAGCAGCTGGAAGAGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGGTTGCTTTGGGAACTACAGCCTCTTATGTTTATTCTGTTTGTGCTCTTCTGTATGGTGCCCTTACAGGATTTTGGTCTCCAACATACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAGTATTTGGAGTGCCTTGCCAAGGGAAAGACCTCTGATGCCATTAAGAAGCTAGTAGAACTTACTCCTGCAACAGCTTTATTGATTGTCAAAGATAAAGGTGGTAGAACTATTGAAGAAAGGGAAATAGATTCCTTGCTCGTTCAACCTGGTGACACATTAAAAGTTCTTCCTGGTACAAAGATTCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGTATGGTGACTGGTGAATCTATACCCGTTTCGAAGGACGTCAATGCATCTGTTATCGGAGGTACGATCAATTTGCATGGTGTCCTTCACGTTCAAGCTACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATAATTAGTTTGGTGGAGACAGCCCAGATGTCCAAAGCTCCCATTCAAAAGTTTGCTGATTATGTTGCAAGCATATTTGTTCCTACAGTTGTGGTGTTGGCATTATTGACACTATTGTGTTGGTATATAGCTGGGGCTCTTGGAGCATACCCTGATGAATGGCTGCCAAAAAATGGAAATCACTTTGTTTTTGCCCTTATGTTTTCAATATCTGTTGTGGTGATTGCATGTCCATGTGCACTTGGTTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGGGTTGGTGCCAACAATGGAGTATTAATTAAAGGAGGAGACTCCTTGGAAAGGGCTCAGATGGTGAAGTACGTCATATTTGATAAAACAGGCACTCTAACTCAGGCGAAAGCCACTGTTACTGCTGCTAAGGTGTTTGCAGGAATGGACCGTGGAGATTTTCTTACATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTGGCAAAAGCAATATCGCAATATGCGCGCCATTTTCATTTCTTTGAGGAGTCTTCCCCTACCAGTGGTACCAAGAATGCTGCTGAGGAGTTCAAGTCAGGGTGGCTTTATGATGTCTCAGACTTCTCTGCTCTTCCAGGAAGGGGCATCCAGTGCTTTATAGACGGGAGGCGTATTTTGGTTGGTAACCGGAAGCTGCTGGAGGAAAATGGCATAAATATTTCTACAGAAGTGGAAAGTTTTGTTGTAGAGATTGAAGAAAGTGCAAAGACAGGGATACTAGTAGCATATGATGATATATTAATTGGAGTCTTAGGGATTGCAGACCCACTAAAGAGAGAAGCTGCTGTTGTTATAGAAGGCCTACAGAAAATGGGAGTCATACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCGAGCTGTAGCCAAAGAGGTTGGCATTCAAGATGTTAGGGCAGAAGTTATGCCTGCAGGAAAGGCTGATGTTGTTCGTTCATTCCAAAAGGATGGAAGTATAGTTGCAATGGTGGGTGATGGCATCAATGACTCTCCAGCATTAGCTGCTGCAGATGTTGGTATGGCAATTGGGGCTGGAACAGATGTTGCAATAGAAGCTGCTAACTATGTGCTGATGAGAGATAACTTGGAAGATGTGATCACAGCCATTGATCTTTCCAGAAAGACCTTTTTCCGTATTCGATTGAATTATGTATTTGCGATGGCTTACAATGTTGTTGCTATACCAGTTGCTGCCGGGGTTTTCTTTCCTTCTTTGGGGATCAAGCTGCCACCATGGGTTGCTGGTGCATGCATGGCTCTGTCATCTGTAAGTGTCGTATGCTCTTCTTTGCTTTTGAGAAGATATAGAAAACCCAAACTTACTACAATACTTGAAATAGTTGTAAATTAA
>Glyma08g09240.1 sequence type=predicted peptide gene model=Glyma08g09240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPSTGDVQLTSPGAGQDFDDLEDIRLLDSYDKNDVVHDETKRIQVRISGMTCAACSNSVQTALRSVHGVTEASVALLQNKAEVVFIPGLVKDEDIKNAIEDAGFEAEILPDSGAAAHAAASAAVLGQFTIVGMTCAACVNSVEGILRNLNGVKRAVVALATSLGEVEYDPHVISKDDIVSAIEDAGFEGAFVQSNGRDQIVLGVSGVYSLGDAQVLEAMLSGTKGVRQFRFDTAVNELDVVFDPEVISSRSLVDGIQLGSNGKFKLHVRNPYARMASKDGSESSAMFRLFISSLFLSIPLFFMGVICPHIPLVYSLLLWRCGPFLMGDWLNWALVSVIQFVIGKRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELTPATALLIVKDKGGRTIEEREIDSLLVQPGDTLKVLPGTKIPADGIVTWGSSYVNESMVTGESIPVSKDVNASVIGGTINLHGVLHVQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVVLALLTLLCWYIAGALGAYPDEWLPKNGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDSLERAQMVKYVIFDKTGTLTQAKATVTAAKVFAGMDRGDFLTLVASAEASSEHPLAKAISQYARHFHFFEESSPTSGTKNAAEEFKSGWLYDVSDFSALPGRGIQCFIDGRRILVGNRKLLEENGINISTEVESFVVEIEESAKTGILVAYDDILIGVLGIADPLKREAAVVIEGLQKMGVIPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAANYVLMRDNLEDVITAIDLSRKTFFRIRLNYVFAMAYNVVAIPVAAGVFFPSLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRKPKLTTILEIVVN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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