Glyma08g09170 - SoyBase

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Report for Sequence Feature Glyma08g09170

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6550311
stop:	6559973
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G31070	AT	Annotation by Michelle Graham. TAIR10: N-acetylglucosamine-1-phosphate uridylyltransferase 1 \| chr1:11084951-11088361 FORWARD LENGTH=505	SoyBase	E_val: 0	ISS
GO:0006047	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-N-acetylglucosamine metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0019276	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-N-acetylgalactosamine metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003977	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylglucosamine diphosphorylase activity	SoyBase	N/A	ISS
GO:0016779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity	SoyBase	N/A	ISS
GO:0052630	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylgalactosamine diphosphorylase activity	SoyBase	N/A	ISS
KOG2388	KOG	UDP-N-acetylglucosamine pyrophosphorylase	JGI		ISS
PTHR11952	Panther	UDP- GLUCOSE PYROPHOSPHORYLASE	JGI		ISS
PTHR11952:SF2	Panther	UDP-N-ACTEYLGLUCOSAMINE PYROPHOSPHORYLASE 1	JGI		ISS
PF01704	PFAM	UTP--glucose-1-phosphate uridylyltransferase	JGI		ISS
UniRef100_D7LHR5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UTP--glucose-1-phosphate uridylyltransferase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LHR5_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1KRI1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRI1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g09170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09170

Paralog	Evidence	Comments
Glyma05g26240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g086700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g09170

Limit To All Plant Sequences

>Glyma08g09170.2   sequence type=transcript   gene model=Glyma08g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATGATAATGGCGGCAGCATAATCCAGATGTGAAAGAGGGAGGGGGTATTTAGATCTGAAATCAAAATCGAAATCGAAACCGAAGAGAGAGAAAACGTGAAACCGAGAGAGAGAGAGAGAGAGATGAGGGAACCATCGTCGGTGGGATTCGAAGGCAACGGCGTCGTTTCTTCGCCGCCGCAAGCTCTCATCGAGAGACTGAAAGACTACGGCCAAGAAGACGTTTTCGCCCTCTGGTACGAGCTCTCCCCCGAGGAACGCGAGTTTCTCGTCAAGGACATTGAGAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGATGCTCGCTGCGATCTCAAGGACTGCCGGCGGCGGCCATTGAGCCGGTGCCGGAGAGCAATGTGTCGACGGTGGAGGAGAGAAGCCAGGAGGATCGAGAGAGATGGTTGAAAATGGGATTGAAAGCTATTTCAGATGGCAAATTAGCCGTGTTGCTTTTATCTGGTGGCCAGGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAATATTGGACTTCCATCTGGAAAATCACTTTTTCAACTTCAAGCTGAGAGGATTTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGAATTCTTCTTCTTCAGTGCAAATACACTGGTACATCATGACTAGTCCATTCACTGATGAGGCAACACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTTGAGGCAGAACAGGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGCAGATTTATTATGGAGACTCCATACAGGGTAGCAAAGGCTCCTGATGGGAATGGTGGAGTGTATTCAGCTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGTATATTGATTGCTATGGAGTTGACAATGCACTGGTTCGAGTTGCTGATCCAACTTTTTTAGGTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGTAAGGCGTATCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGTAAAGGTGGTCCTCTTACTGTAGTTGAATACAGTGAGTTGGACCAGTCACTAGCTTCTGCAGTCAATCAAGCAACTGGCCGTCTTCGTTTTTGTTGGAGTAATGTCTGCTTACACATGTTCACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAATGTTGACACTCCAGACAGTGCGAAACTACTTGTTCTTCGACTCCATACTCGTTGGGTAGTTGCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAGGTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCAATATGTCGAGGAAGAACATTTCATGCACCTTGTGAGATCTCGTTCTAGTTCCACCCTGTTTGTGCGGCTTTTTTGTGACTTACACTACAATGAGGGAGTTCTCAGTCCCATACATGTTGCAAGATTACTTTGCGTATGCCACTCATCATTCACAGTTATCAATGTATATTATCTTCTCCAATCTGTTTCTGATTGGTTTTTGGTTTTTTCTTTTTTGGCCACTGATCTGTTTTAGTGTGCTGAGGAATGTACATGTATCATAATTTTACTGAGCATTTATTTGCCCATGCAGACTCCAATATATCGCCCCATTTTCCTTTTTCCTTAACTATTTACCAAATTAATTCGTGCCATAGTCCATAATTTTTTTTATTGTAATTTCACCCTTTATTTGAGGTAGTTGGGGGAATAGAGGTGATGAGGGAATGACACGGGGATGTAAATCCCTGCCCATTAAACAAATTCACTATCCATGTAAGATTTGGATTACGTGCTTTATTATACGTTTGGAAAATTAAATTTTATATATTTCGTTAAC

Coding sequences of Glyma08g09170

Limit To All Plant Sequences

>Glyma08g09170.1   sequence type=CDS   gene model=Glyma08g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGAACCATCGTCGGTGGGATTCGAAGGCAACGGCGTCGTTTCTTCGCCGCCGCAAGCTCTCATCGAGAGACTGAAAGACTACGGCCAAGAAGACGTTTTCGCCCTCTGGTACGAGCTCTCCCCCGAGGAACGCGAGTTTCTCGTCAAGGACATTGAGAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGATGCTCGCTGCGATCTCAAGGACTGCCGGCGGCGGCCATTGAGCCGGTGCCGGAGAGCAATGTGTCGACGGTGGAGGAGAGAAGCCAGGAGGATCGAGAGAGATGGTTGAAAATGGGATTGAAAGCTATTTCAGATGGCAAATTAGCCGTGTTGCTTTTATCTGGTGGCCAGGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAATATTGGACTTCCATCTGGAAAATCACTTTTTCAACTTCAAGCTGAGAGGATTTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGAATTCTTCTTCTTCAGTGCAAATACACTGGTACATCATGACTAGTCCATTCACTGATGAGGCAACACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTTGAGGCAGAACAGGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGCAGATTTATTATGGAGACTCCATACAGGGTAGCAAAGGCTCCTGATGGGAATGGTGGAGTGTATTCAGCTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGTATATTGATTGCTATGGAGTTGACAATGCACTGGTTCGAGTTGCTGATCCAACTTTTTTAGGTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGTAAGGCGTATCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGTAAAGGTGGTCCTCTTACTGTAGTTGAATACAGTGAGTTGGACCAGTCACTAGCTTCTGCAGTCAATCAAGCAACTGGCCGTCTTCGTTTTTGTTGGAGTAATGTCTGCTTACACATGTTCACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAATGTTGACACTCCAGACAGTGCGAAACTACTTGTTCTTCGACTCCATACTCGTTGGGTAGTTGCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAGGTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCAATATGTCGAGGAAGAACATTTCATGCACCTTGTGAGATCTCGTTCTAG

>Glyma08g09170.2   sequence type=CDS   gene model=Glyma08g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGAACCATCGTCGGTGGGATTCGAAGGCAACGGCGTCGTTTCTTCGCCGCCGCAAGCTCTCATCGAGAGACTGAAAGACTACGGCCAAGAAGACGTTTTCGCCCTCTGGTACGAGCTCTCCCCCGAGGAACGCGAGTTTCTCGTCAAGGACATTGAGAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGATGCTCGCTGCGATCTCAAGGACTGCCGGCGGCGGCCATTGAGCCGGTGCCGGAGAGCAATGTGTCGACGGTGGAGGAGAGAAGCCAGGAGGATCGAGAGAGATGGTTGAAAATGGGATTGAAAGCTATTTCAGATGGCAAATTAGCCGTGTTGCTTTTATCTGGTGGCCAGGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAATATTGGACTTCCATCTGGAAAATCACTTTTTCAACTTCAAGCTGAGAGGATTTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGAATTCTTCTTCTTCAGTGCAAATACACTGGTACATCATGACTAGTCCATTCACTGATGAGGCAACACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTTGAGGCAGAACAGGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGCAGATTTATTATGGAGACTCCATACAGGGTAGCAAAGGCTCCTGATGGGAATGGTGGAGTGTATTCAGCTCTGAAATCTACCAAATTATTGGAGGATATGGCCTCAAAAGGAATTAAGTATATTGATTGCTATGGAGTTGACAATGCACTGGTTCGAGTTGCTGATCCAACTTTTTTAGGTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGTAAGGCGTATCCACAAGAAAAGGTTGGTGTGTTTGTAAGACGAGGTAAAGGTGGTCCTCTTACTGTAGTTGAATACAGTGAGTTGGACCAGTCACTAGCTTCTGCAGTCAATCAAGCAACTGGCCGTCTTCGTTTTTGTTGGAGTAATGTCTGCTTACACATGTTCACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACGACTGCACTTTTTGAGGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAATGTTGACACTCCAGACAGTGCGAAACTACTTGTTCTTCGACTCCATACTCGTTGGGTAGTTGCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAGGTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCAATATGTCGAGGAAGAACATTTCATGCACCTTGTGAGATCTCGTTCTAG

Predicted protein sequences of Glyma08g09170

Limit To All Plant Sequences

>Glyma08g09170.1   sequence type=predicted peptide   gene model=Glyma08g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREPSSVGFEGNGVVSSPPQALIERLKDYGQEDVFALWYELSPEEREFLVKDIESLDLSRIDRIIRCSLRSQGLPAAAIEPVPESNVSTVEERSQEDRERWLKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCAQRLAAQATNENSSSSVQIHWYIMTSPFTDEATRKFFESHKFFGLEAEQVTFFQQGTIPCVSKDGRFIMETPYRVAKAPDGNGGVYSALKSTKLLEDMASKGIKYIDCYGVDNALVRVADPTFLGYFIDKGVAAAAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDQSLASAVNQATGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHGYTMGLKLEQFIFDAFPYAPTTALFEVLREEEFAPVKNANGSNVDTPDSAKLLVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPLCSYAGENLEPICRGRTFHAPCEISF*

>Glyma08g09170.2   sequence type=predicted peptide   gene model=Glyma08g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREPSSVGFEGNGVVSSPPQALIERLKDYGQEDVFALWYELSPEEREFLVKDIESLDLSRIDRIIRCSLRSQGLPAAAIEPVPESNVSTVEERSQEDRERWLKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCAQRLAAQATNENSSSSVQIHWYIMTSPFTDEATRKFFESHKFFGLEAEQVTFFQQGTIPCVSKDGRFIMETPYRVAKAPDGNGGVYSALKSTKLLEDMASKGIKYIDCYGVDNALVRVADPTFLGYFIDKGVAAAAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDQSLASAVNQATGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHGYTMGLKLEQFIFDAFPYAPTTALFEVLREEEFAPVKNANGSNVDTPDSAKLLVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPLCSYAGENLEPICRGRTFHAPCEISF*

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