Glyma08g09120 - SoyBase

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Report for Sequence Feature Glyma08g09120

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6490905
stop:	6512307
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G44800	AT	Annotation by Michelle Graham. TAIR10: chromatin remodeling 4 \| chr5:18083659-18092162 REVERSE LENGTH=2223	SoyBase	E_val: 0	ISS
GO:0006333	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003682	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chromatin binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0383	KOG	Predicted helicase	JGI		ISS
PTHR10799	Panther	ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED	JGI		ISS
PTHR10799:SF131	Panther	SWI/SNF CHROMATIN REMODELING COMPLEX COMPONENT	JGI		ISS
PF00176	PFAM	SNF2 family N-terminal domain	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
PF00385	PFAM	chromo' (CHRromatin Organisation MOdifier) domain	JGI		ISS
PF00628	PFAM	PHD-finger	JGI		ISS
PF06465	PFAM	Domain of Unknown Function (DUF1087)	JGI		ISS
UniRef100_B9N3S4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9N3S4_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1KRH6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRH6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g09120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09120

Paralog	Evidence	Comments
Glyma05g26180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g086100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g09120

Limit To All Plant Sequences

>Glyma08g09120.1   sequence type=CDS   gene model=Glyma08g09120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGAAAACAAATCTTCAGCACCTAAAATGCTTAACAGGAACTGGGTTTTAAAGCGTAAGCGGAGAAAACTTCCTTTAGGACTAGATCAGTCATCTGGTAAAGAGCAATCCAATGGTAAAGAAGAAAATTCACTAACATCCGAATCTTCTAGAAATGCTTCAGCTAAACGTGTGCTAAAGACTGAAGTAGCTACTGGTCAAATTTCATCTAAGAAGAAAGGAAATGATGGGTATTACTACGAATGTGTGATCTGTGATGTTGGTGGCAACTTATTGTGCTGTGACAGTTGTCCTCGCACTTATCATTTACAATGTCTTGATCCTCCTCTTAAGCGCATCCCTAATGGGAAGTGGCAATGTCCAAGTTGCTTTGAAGGAAAAGATCAATTAATGCCCAAAAACCACCTGGATCCAATTTCAAAACGAGCAAGGACAAAGATTGTCACTACAAAATCAAAAGATCAAGTTAGCTCACTTAACCTTGAAAAAGTTTTTGGAACTAAACTTGTTTCAAAGAAAAGGTCCTCAAGCAAGGGAAAACCTATTTCAAGCATGGGAGTCCAATTTTTTGGAAAGAAATTATTGTCTTCCCCAGCTGATGAAACTTGTAGCGACAAACCTATTGACCCATCTCCTGAGAGTCTTATGGAAGGAACTTCGCCAGGTGTGGATGCTGATGAAAAAAAATTGAGCTTGTCCCCAAACGAATACCCAGTGGACAGGAAGTCAACTTCACCAGCCAAGGAAGATGAACCGCTCTCTAAAATTGCTAGTTTAGAAGCAATTGATGAACAGCTGGAGAGCAAGACTGATTTAACTTGCAGTAAGATTTCTTCAAGGAAAACACTTGTTCTTGCTATTGCTGCTAGTGGAGAGGAAGTGAGAAAAAGGAAGAATAAAGTTGTTAATGATAATACTAGTCAAAAGAAACGAAAGGCTGAAAAGGGGAAAAAAATTGTCAATCCTTCTTCTATAAAATCCAAGTCTGGGAATAATAAAGTACACAAGAAGCAGAAGTCTATAACCCATAGCATTTCTGCATCTGTATCAAAAGAGGATGTTGGAAACAAGAATTCTAGTGCCCAGCAGAAAGATGAGAAGATCTCTCAGCTAATGAAAGATACCCCAAGTGAAGTTGATAAAGCATGGAGCCGCATGGACAAAACTTTGTTGCATGAAGACAGTGCTATTGCTGAGTCTTTGCAGGTTGATCGGGTTCTAGGGTGTCGAATTCAAGGTGAGAATGCAAATTCATCACGTAACTTGTCCTTGAATGTTGCGGGTGACTCACCTTCTGGTGATCTAGTAATATCAGAAAATCAGTCCAGACTACTAGATGATAATTCTGCTTGTGCTAATGATTTGGATGTTGAATCAACTGAAAATCATATTGAGGATTGTCAAAATGTCAAGAGTTCTGATGAAGAAGGAATACTGAAAAACACTGATAGACTGGAAAGGATTCATGTATACAGAAGATCAATAACAAAAGAGAGCAAGAAAGGAAATTCTGTAGATTCGTTGAGTAAAGCCACTGGTGATTTAGATCCCTGTGACTGGGATGGTAAAGATCAGGATGATTCTGCTGTATCTGCTGAACAGTTGGAAAAACCAACTGACAAGGTGGAGACAGAGGAGATCATTAATGTTGCTTTAAGAAGTGAGGACAACAGTGAGATTCCAAAAAACTGTGAAATACAACTCTCTCCTGAAGCAAAACAAAAAGAAAGGAATGCAGAGAAGGGAATGAGTGGCAGTATTGATGATAAAGCTCAGGATGCTATCATAGCTGAATGCGCAGGCCCAAATGGAGAGCAAGTTTTCTATGAATTTTTAGTTAAATGGGTAGGAAAGTCTCATATTCATAATAGTTGGATTTCTGAATCCCAGTTAAAAGTTCTTGCAAAGAGAAAACTAGAAAATTACAAGGCAAAGTATGGGATGACGATAATTAATATTTGTGAGGAGCGTTGGAAGCAGCCTCAGCGGGTGCTTGCCCTTCGAACTTCCAAACATGGAACATCTGAAGCATTTATAAAATGGACTGGACTGCCTTATGATGAATGCACTTGGGAAAGTTTAGATGAACCAGTGCTTCAAATTTCTTCTCATTTGATTACACTTTTCAATAAGCTTGAAACTCTCACTCTTGAAAGGGATTCATCAAAGGAAAATTCAACTAGGAAAAGCAATGACCATCAAAATGATATTTTTAATCTTACAGAGCAACCTGAGGATCTAAAAGGTGGTTCTTTGTTTCCCCATCAGCTTGAGGCACTGAACTGGTTGCGTAAATGCTGGTATAAGTCCAAAAATGTGATACTTGCTGATGAGATGGGGCTTGGAAAAACAGTATCTGCTTGTGCTTTTATTTCATCATTGTATTTTGAATTCAAAGTTTCACTTCCTTGCTTGGTCTTGGTACCACTTTCTACCATGCCTAATTGGCTTGCTGAATTTGAACTTTGGGCTCCGAATGTGAATGTTGTAGAATATCATGGCTGTGCTAAAGCAAGAGCAATAATTCGCCAGTATGAATGGCATGCAAATGATCCAAGTGGGTTGAATAAGAAAACAGAAGCCTATAAATTTAATGTGCTTTTAACTACATATGAAATGGTTCTTGCTGATTCTTCTCATTTGCGTGGAGTTCCTTGGGAAGTTCTTGTTGTTGACGAGGGTCATCGACTGAAGAATTCAGAAAGTAAGCTTTTCAGCTTGCTAAATACATTCTCTTTTCAACATCGTGTACTGTTGACAGGTACTCCTCTCCAGAACAACCTTGGCGAGATGTACAACTTGCTTAATTTCTTGCAGCCAGCTTCATTTCCTTCTCTATCTTTATTTGAGGAGAAATTTAATGATCTTACAACTGCAGAGAAAGTTGATGAATTGAAAAAACTTGTTGCTCCTCACATGCTTCGTAGACTTAAAAAGGATGCCATGCAAAATATCCCCCCTAAGACAGAAAGAATGGTTCCTGTTGAGTTGTCATCCATCCAAGCTGAATATTATCGTGCAATGCTTACAAAGAATTATCAAGTATTGCGGAATATTGGGAAAGGAGTTGCCCAACAATCTATGTTGAACATCGTGATGCAATTGAGGAAGGTCTGTAATCATCCATACCTCATACCAGGAACTGAGCCTGAATCTGGTTCTGTTGAGTTCCTTCACGAAATGAGAATCAAGGCTTCAGCTAAGTTGACTCTTCTGCATTCTATGCTAAAGATTTTACACAGGGAAGGTCACAGAGTTCTTATTTTCTCACAAATGACCAAGCTTCTTGACATCTTGGAGGACTATTTGAATATAGAATTTGGGTCTAAAACGTATGAGAGAGTGGATGGATCTGTTTCTGTAGCTGATCGCCAGACAGCTATTGCACGCTTTAACCAAGACAAAAGTAGATTTGTTTTTTTGTTATCCACTCGCTCTTGTGGACTTGGGATAAATTTGGCAACTGCTGACACTGTCATCATCTATGATTCTGATTTCAATCCCCATGCAGATATCCAAGCAATGAATCGAGCACACAGAATTGGACAATCAAATAGACTTTTGGTATACCGGCTTGTGGTTCGTGCTAGTGTTGAAGAGCGCATCTTGCAGCTTGCTAAGAAGAAATTGATGCTTGATCAGCTTTTTGTAAATAAGTCAGGATCTCAAAAAGAGGTAGAAGATATTTTAAAGTGGGGAACTGAGGAACTCTTCAACGATTCTCCTGGACTGAATGGGAAAGACATGAGTGAAAATAACAATAGTAGCAAAGATGAGGCAGTAGCAGATATAGAACATAAGCATCGGAAGAGGACTGGTGGTCTGGGAGATGTATACAAGGATAAGTGTACTGATAGCAGCAGCAAGATTCTGTGGGATGAAAATGCTATTTTAAAATTGCTTGATCGTTCAAACCTTCAAGATGGTTCAACTGATAATGCCGAAGGGGATTCTGAGAATGATATGCTGGGCTCAGTGAAGGCGCTTGAGTGGAATGATGAACCAACTGAAGAACATGTAGTGGGTGAATCTCCTCCTCATGGGACTGATGATGTGTCTACACAAAATTCTGAGAAGAAAGAGGATAATGCAGTGAATGGCAATGAAGAAAATGAATGGGACAAACTACTGCGTGTGAGGTGGGAGAAATATCAAAGTGAGGAGGAAGCAGCTCTTGGTCGAGGGAAGCGACAGAGAAAAGCTGTTTCTTATAGGGAAGTATATGCTCCACATCCAAGTGAAACAATGAGTGAGAGTGGTGGTGAAGAGGAAAAAGAGCCAGAACCAGAGCCTGAGCGTGAATATACACCAGCAGGACGGGCCCTCAAGGCAAAATATGGTAAACTCCGTGCTCGGCAAAAGGAACGACTTGCCCGGATAAAAGCGATTAAAGAATCAAATCCTGCTGAGGGATTTCCAGGTAATGAGTTACTTTCACATTCTCCAGCCATTGCCAAGGGTGGGGATCCAGTGGCTGGACCGATGCATTCAGATCAGGAGGGGCCTTCTATCAACCTAGAAGACAGACAACTTTCTGAAGCGAAGAATAGCAACACTGACTCCTTTTCAAGGATCAATAAGCTTTCAAAACATAAAATGACCAGTCATTTTGATGCTTCTGTCAGTAATCTAGGTCGTTCTCTCCCTGACATTTTTCTTCCAAGTCACCCTAAAGTGGGGCTGAGCATGACAAACTCAATGCCCACCAACAATTTGTTGCCTGTACTGGGACTTTGTGCTCCTAATGCTAACCAAATAGAATCATCGGAAAGTAATATTTCGAAGTTAAATTGGAGACATAGACATGGATCCAGACAAGAGTTTCCATTCAGTCTTGCCCCTTGCTCTGGGACATCCATGGATGCTGAGGTCAGAAGTAAGGAAGTGGCAGCAAATACCAAGCTGGCAGATGCATCAACAGAAAATTTACAACCAAGTTTCAAAAATAGCATCCCTGATAACAGTCTAACATTTGTTCCTTTTCCACCCTGTGTGCAAGGAAAGGAATCTGATGCATTTGAAAATTCAGGTGCTAGATTTTCTCATTTTCAGGAGAAGATGGCCTTGCCGAATCTGCCATTTGATGAAAGGTTGCTGGCCAGATTTCCTCTTACAACCAAGAGCATGCCAAATTCACATCTGGACCTCTTGCCCAGTTTGTCTATAGGAGGAAGACTTGAATCTTTGAATGGGTCTATGCAAGACCTTCCAACAATGCCAGTGTTGCCTAATTTCAAAATACCCCCTGAAGATTTATTCAGATATAATCAACAAGACAGGGATGCTCCCCCTACTTTGGGTTTGGGACAAAGGCCAACCACATTCTCATCTTTCCCAGAAAACCATAGGAAGGTGCTTGAAAACATAATGATGAGAACTGGATCTGGATCAAGTAATTTATTGAAAAAGAAGTCAAAATCAGATGGGTGGTCTGAAGATGAACTTGATTCTCTCTGGATTGGTGTTCGTAGGCATGGAAGGGGCAATTGGGATGCTATGCTCAGAGATCCCAAGTTAAAGTTTTCAAAGTATAAAACATCTGAGGATTTATCAGTGAGGTGGGAAGAGGAACAGGTAAAGGTCTTTCAGGGGCCACCTTTTCCTGCACAAAGATCATCCAAGACTATGAAATCTACCAAATCGGCCCATTTTCCAATCTCTGATGGAATGATGGAAAGGGCTTTGCATGGGAGCAAATTTCTTTTGCCGCCAAAATTTCAAAACCATCTGACTGACATGAAATTAGGGATAGGTGATTCTGCATCTAGTCTGTCACATTTTAGTACATTGGACCGACCTAGTTTGCAAAATGATCACTTCGTACCTCTTCCATCTTGGAGTTATGATAAAAACAGATCAAAATTTCCTGAAGGTGCTTCTGCTGAAACATCTGATAGACCAGGAACTTCCAGTGTACTGACTGAAAGACCATTTCTGCTTAATTCTTTTGGAACCAGTACCTTGGGTTCTTTAGGCTTGAATTGCTCAGGCAGCATTGATGCGCATCAAAAGGAGGATGACCAAGGAAGCTCCAAGCGTGGAAAGTTGCCCGTACTACTTGATGGATCATCCAATGATGTGCGTCATAATCCCATTAATGTAGGAAATGGTGAGTCTACTAGCTCTGGATTGTTATCTAACCCCACTAGACCTGATCTTTTGCACTCAAAAGGAGAGGAAGTGGGTGGAAGCAGTACTTTGAAAGACAAGCTTCCCCACTGGTTACGAGAAGCTGTGAGCTCCCCAGCCAAACTTCCTGATCCTGAACTTCCACCCACAGTATCAGCCATTGCTCAATCAGTTCGCCTGTTATACGGGGAAGATAAGCCTACAATTCCCCCGTTTGTGATTCCTGGACCACCTCCCTCCCTACCAAAGGACCCCAGGTCTAGTGTCAAAAAGAAAAAGAAGAGAAGATCACACAAGATCAGTCGGAGTCTTCCAGATTTTGCGGGAAATCAGCGGGGATTTGCACAGCAGCCACCATGTTGA

Predicted protein sequences of Glyma08g09120

Limit To All Plant Sequences

>Glyma08g09120.1   sequence type=predicted peptide   gene model=Glyma08g09120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKENKSSAPKMLNRNWVLKRKRRKLPLGLDQSSGKEQSNGKEENSLTSESSRNASAKRVLKTEVATGQISSKKKGNDGYYYECVICDVGGNLLCCDSCPRTYHLQCLDPPLKRIPNGKWQCPSCFEGKDQLMPKNHLDPISKRARTKIVTTKSKDQVSSLNLEKVFGTKLVSKKRSSSKGKPISSMGVQFFGKKLLSSPADETCSDKPIDPSPESLMEGTSPGVDADEKKLSLSPNEYPVDRKSTSPAKEDEPLSKIASLEAIDEQLESKTDLTCSKISSRKTLVLAIAASGEEVRKRKNKVVNDNTSQKKRKAEKGKKIVNPSSIKSKSGNNKVHKKQKSITHSISASVSKEDVGNKNSSAQQKDEKISQLMKDTPSEVDKAWSRMDKTLLHEDSAIAESLQVDRVLGCRIQGENANSSRNLSLNVAGDSPSGDLVISENQSRLLDDNSACANDLDVESTENHIEDCQNVKSSDEEGILKNTDRLERIHVYRRSITKESKKGNSVDSLSKATGDLDPCDWDGKDQDDSAVSAEQLEKPTDKVETEEIINVALRSEDNSEIPKNCEIQLSPEAKQKERNAEKGMSGSIDDKAQDAIIAECAGPNGEQVFYEFLVKWVGKSHIHNSWISESQLKVLAKRKLENYKAKYGMTIINICEERWKQPQRVLALRTSKHGTSEAFIKWTGLPYDECTWESLDEPVLQISSHLITLFNKLETLTLERDSSKENSTRKSNDHQNDIFNLTEQPEDLKGGSLFPHQLEALNWLRKCWYKSKNVILADEMGLGKTVSACAFISSLYFEFKVSLPCLVLVPLSTMPNWLAEFELWAPNVNVVEYHGCAKARAIIRQYEWHANDPSGLNKKTEAYKFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNLGEMYNLLNFLQPASFPSLSLFEEKFNDLTTAEKVDELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQVLRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPESGSVEFLHEMRIKASAKLTLLHSMLKILHREGHRVLIFSQMTKLLDILEDYLNIEFGSKTYERVDGSVSVADRQTAIARFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILKWGTEELFNDSPGLNGKDMSENNNSSKDEAVADIEHKHRKRTGGLGDVYKDKCTDSSSKILWDENAILKLLDRSNLQDGSTDNAEGDSENDMLGSVKALEWNDEPTEEHVVGESPPHGTDDVSTQNSEKKEDNAVNGNEENEWDKLLRVRWEKYQSEEEAALGRGKRQRKAVSYREVYAPHPSETMSESGGEEEKEPEPEPEREYTPAGRALKAKYGKLRARQKERLARIKAIKESNPAEGFPGNELLSHSPAIAKGGDPVAGPMHSDQEGPSINLEDRQLSEAKNSNTDSFSRINKLSKHKMTSHFDASVSNLGRSLPDIFLPSHPKVGLSMTNSMPTNNLLPVLGLCAPNANQIESSESNISKLNWRHRHGSRQEFPFSLAPCSGTSMDAEVRSKEVAANTKLADASTENLQPSFKNSIPDNSLTFVPFPPCVQGKESDAFENSGARFSHFQEKMALPNLPFDERLLARFPLTTKSMPNSHLDLLPSLSIGGRLESLNGSMQDLPTMPVLPNFKIPPEDLFRYNQQDRDAPPTLGLGQRPTTFSSFPENHRKVLENIMMRTGSGSSNLLKKKSKSDGWSEDELDSLWIGVRRHGRGNWDAMLRDPKLKFSKYKTSEDLSVRWEEEQVKVFQGPPFPAQRSSKTMKSTKSAHFPISDGMMERALHGSKFLLPPKFQNHLTDMKLGIGDSASSLSHFSTLDRPSLQNDHFVPLPSWSYDKNRSKFPEGASAETSDRPGTSSVLTERPFLLNSFGTSTLGSLGLNCSGSIDAHQKEDDQGSSKRGKLPVLLDGSSNDVRHNPINVGNGESTSSGLLSNPTRPDLLHSKGEEVGGSSTLKDKLPHWLREAVSSPAKLPDPELPPTVSAIAQSVRLLYGEDKPTIPPFVIPGPPPSLPKDPRSSVKKKKKRRSHKISRSLPDFAGNQRGFAQQPPC*

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