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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G60620 | AT | Annotation by Michelle Graham. TAIR10: glycerol-3-phosphate acyltransferase 9 | chr5:24367266-24369647 FORWARD LENGTH=376 | SoyBase | E_val: 0 | ISS |
| GO:0006301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: postreplication repair | SoyBase | N/A | ISS |
| GO:0006651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: diacylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0019432 | GO-bp | Annotation by Michelle Graham. GO Biological Process: triglyceride biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups | SoyBase | N/A | ISS |
| KOG2898 | KOG | Predicted phosphate acyltransferase, contains PlsC domain | JGI | ISS | |
| PTHR23063 | Panther | ACETYLTRANSFERASE-RELATED | JGI | ISS | |
| PTHR23063:SF2 | Panther | ACYLTRANSFERASE-LIKE PROTEIN 4 | JGI | ISS | |
| PF01553 | PFAM | Acyltransferase | JGI | ISS | |
| UniRef100_C6TLG5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TLG5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_C9WGL0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycerol-3-phosphate acyltransferase 9 n=1 Tax=Vernicia fordii RepID=C9WGL0_VERFO | SoyBase | E_val: 0 | ISS |
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Glyma08g09080 not represented in the dataset |
Glyma08g09080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g26141 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g085800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g09080.4 sequence type=transcript gene model=Glyma08g09080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCCCAAGGACTCGGATGAATCATGTTTGGTTAGGACAAAATTGCCCTCCATCACTTTCCTTGTTAGAGTTGGTTTCTGCAACCTACCATGCAATTCCTCACCTGAATCCGTTTTCTATTGCCACGTTGTGGAAGCGTAACGAAGATGAATGGCATTGGGAAACTCAAATCGTCGAGTTCTGAATTGGACCTTCACATTGAAGATTACCTACCTTCTGGATCCAGTGTTCAACAAGAACGGCATGGCAAGCTCCGACTGTGTGATTTGCTAGACATTTCTCCTAGTCTATCTGAGGCAGCACGTGCCATTGTAGATGATACATTCACAAGGTGCTTCAAGTCAAATCCTCCAGAACCTTGGAACTGGAATGTTTATTTGTTTCCTTTGTGGTGCTGTGGAGTTGTGGTTCGATATTTGATTTTGTTCCCTATTAGGATTCTAGTGTTGGCATTAGGATGGATTATATTTCTTTCAGCCTTCATTCCAGTGCACTCCCTCCTGAAAGGAAATGATGATTTGAGGAAAAAGATTGAGAGGTGTTTGGTGGAGATGATGTGCAGTTTCTTTGTTGCATCATGGACTGGGGTTGTCAAGTACCATGGGCCAAGACCTAGTATCCGACCAAAACAGGTTTTTGTGGCCAATCATACTTCCATGATTGATTTCATTATCTTAGAACAGATGACTGCATTTGCTGTTATTATGCAGAAGCATCCTGGATGGGTTGGATTATTGCAGAGCACCATTTTGGAGAGTGTGGGGTGTATCTGGTTCAATCGTACAGAGGCAAAGGATCGAGAAATTGTGGCAAGGAAATTGAGGGATCATGTCCTGGGAGCTAACAATAACCCTCTTCTCATATTTCCTGAAGGAACTTGTGTAAATAATCACTACTCTGTCATGTTCAAGAAGGGTGCATTTGAACTTGGCTGCACAATTTGCCCAGTTGCAATCAAGTACAATAAAATTTTCGTCGATGCTTTTTGGAATAGTCGAAAGCAATCATTCACCACTCATCTCTTGCAATTAATGACATCTTGGGCTGTAGTTTGTGATGTTTGGTACTTGGAGCCACAAAATTTGAAGCCAGGAGAGACACCCATTGAATTTGCAGAGAGAGTTAGAGACATAATCTCACATCGTGCTGGGCTTAAAAAGGTTCCTTGGGATGGATATCTGAAGTATTCTCGCCCTAGTCCCAAGCACAGAGAAGGAAAGCAACAAATATTCGCTGAGTCTGTGTTGCGGCGCTTTGAGGAAAAATAATGTATATCTTTTTACTTTTTCAGTAATGATTTTCTCCAACCCTTGTTTGTACTCCACTTACTACTATGATATACATGTAGATCTTACATGAAATTGCCTGAAAATTTTCCATGACCAGTTGCGCTCTGTTATGGACAAAACTAACAGGAACTATTCATTTTTAGGTATGAAAACTTTTTGCAGTTAAGAC >Glyma08g09080.5 sequence type=transcript gene model=Glyma08g09080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTAAATAGGCGCGGTAGGCATGCTCCCCAAGGACTCGGATGAATCATGTTTGGTTAGGACAAAATTGCCCTCCATCACTTTCCTTGTTAGAGTTGGTTTCTGCAACCTACCATGCAATTCCTCACCTGAATCCGTTTTCTATTGCCACGTTGGATCGAAAAGTCTAGTTTAACCACACGTTTGTGGTTGTAGTGGAAGCGTAACGAAGATGAATGGCATTGGGAAACTCAAATCGTCGAGTTCTGAATTGGACCTTCACATTGAAGATTACCTACCTTCTGGATCCAGTGTTCAACAAGAACGGCATGGCAAGCTCCGACTGTGTGATTTGCTAGACATTTCTCCTAGTCTATCTGAGGCAGCACGTGCCATTGTAGATGATACATTCACAAGGTGCTTCAAGTCAAATCCTCCAGAACCTTGGAACTGGAATGTTTATTTGTTTCCTTTGTGGTGCTGTGGAGTTGTGGTTCGATATTTGATTTTGTTCCCTATTAGGATTCTAGTGTTGGCATTAGGATGGATTATATTTCTTTCAGCCTTCATTCCAGTGCACTCCCTCCTGAAAGGAAATGATGATTTGAGGAAAAAGATTGAGAGGTGTTTGGTGGAGATGATGTGCAGTTTCTTTGTTGCATCATGGACTGGGGTTGTCAAGTACCATGGGCCAAGACCTAGTATCCGACCAAAACAGGTTTTTGTGGCCAATCATACTTCCATGATTGATTTCATTATCTTAGAACAGATGACTGCATTTGCTGTTATTATGCAGAAGCATCCTGGATGGGTTGGATTATTGCAGAGCACCATTTTGGAGAGTGTGGGGTGTATCTGGTTCAATCGTACAGAGGCAAAGGATCGAGAAATTGTGGCAAGGAAATTGAGGGATCATGTCCTGGGAGCTAACAATAACCCTCTTCTCATATTTCCTGAAGGAACTTGTGTAAATAATCACTACTCTGTCATGTTCAAGAAGGGTGCATTTGAACTTGGCTGCACAATTTGCCCAGTTGCAATCAAGTACAATAAAATTTTCGTCGATGCTTTTTGGAATAGTCGAAAGCAATCATTCACCACTCATCTCTTGCAATTAATGACATCTTGGGCTGTAGTTTGTGATGTTTGGTACTTGGAGCCACAAAATTTGAAGCCAGGAGAGACACCCATTGAATTTGCAGAGAGAGTTAGAGACATAATCTCACATCGTGCTGGGCTTAAAAAGGTTCCTTGGGATGGATATCTGAAGTATTCTCGCCCTAGTCCCAAGCACAGAGAAGGAAAGCAACAAATATTCGCTGAGTCTGTGTTGCGGCGCTTTGAGGAAAAATAATGTATATCTTTTTACTTTTTCAGTAATGATTTTCTCCAACCCTTGTTTGTACTCCACTTACTACTATGATATACATGTAGATCTTACATGAAATTGCCTGAAAATTTTCCATGACCAGTTGCGCTCTGTTATGGACAAAACTAACAGGAACTATTCATTTTTAGGTATGAAAACTTTTTGCAGTTAAGACAATTTGAATCTCGATATGCCTATCTAAATTGTTACTATTTATCC
>Glyma08g09080.2 sequence type=CDS gene model=Glyma08g09080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGGCATTGGGAAACTCAAATCGTCGAGTTCTGAATTGGACCTTCACATTGAAGATTACCTACCTTCTGGATCCAGTGTTCAACAAGAACGGCATGGCAAGCTCCGACTGTGTGATTTGCTAGACATTTCTCCTAGTCTATCTGAGGCAGCACGTGCCATTGTAGATGATACATTCACAAGGTGCTTCAAGTCAAATCCTCCAGAACCTTGGAACTGGAATGTTTATTTGTTTCCTTTGTGGTGCTGTGGAGTTGTGGTTCGATATTTGATTTTGTTCCCTATTAGGATTCTAGTGTTGGCATTAGGATGGATTATATTTCTTTCAGCCTTCATTCCAGTGCACTCCCTCCTGAAAGGAAATGATGATTTGAGGAAAAAGATTGAGAGGTGTTTGGTGGAGATGATGTGCAGTTTCTTTGTTGCATCATGGACTGGGGTTGTCAAGTACCATGGGCCAAGACCTAGTATCCGACCAAAACAGGTTTTTGTGGCCAATCATACTTCCATGATTGATTTCATTATCTTAGAACAGATGACTGCATTTGCTGTTATTATGCAGAAGCATCCTGGATGGGTTGGATTATTGCAGAGCACCATTTTGGAGAGTGTGGGGTGTATCTGGTTCAATCGTACAGAGGCAAAGGATCGAGAAATTGTGGCAAGGAAATTGAGGGATCATGTCCTGGGAGCTAACAATAACCCTCTTCTCATATTTCCTGAAGGAACTTGTGTAAATAATCACTACTCTGTCATGTTCAAGAAGGGTGCATTTGAACTTGGCTGCACAATTTGCCCAGTTGCAATCAAGTACAATAAAATTTTCGTCGATGCTTTTTGGAATAGTCGAAAGCAATCATTCACCACTCATCTCTTGCAATTAATGACATCTTGGGCTGTAGTTTGTGATGTTTGGTACTTGGAGCCACAAAATTTGAAGCCAGGAGAGACACCCATTGAATTTGCAGAGAGGTAA >Glyma08g09080.4 sequence type=CDS gene model=Glyma08g09080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGGCATTGGGAAACTCAAATCGTCGAGTTCTGAATTGGACCTTCACATTGAAGATTACCTACCTTCTGGATCCAGTGTTCAACAAGAACGGCATGGCAAGCTCCGACTGTGTGATTTGCTAGACATTTCTCCTAGTCTATCTGAGGCAGCACGTGCCATTGTAGATGATACATTCACAAGGTGCTTCAAGTCAAATCCTCCAGAACCTTGGAACTGGAATGTTTATTTGTTTCCTTTGTGGTGCTGTGGAGTTGTGGTTCGATATTTGATTTTGTTCCCTATTAGGATTCTAGTGTTGGCATTAGGATGGATTATATTTCTTTCAGCCTTCATTCCAGTGCACTCCCTCCTGAAAGGAAATGATGATTTGAGGAAAAAGATTGAGAGGTGTTTGGTGGAGATGATGTGCAGTTTCTTTGTTGCATCATGGACTGGGGTTGTCAAGTACCATGGGCCAAGACCTAGTATCCGACCAAAACAGGTTTTTGTGGCCAATCATACTTCCATGATTGATTTCATTATCTTAGAACAGATGACTGCATTTGCTGTTATTATGCAGAAGCATCCTGGATGGGTTGGATTATTGCAGAGCACCATTTTGGAGAGTGTGGGGTGTATCTGGTTCAATCGTACAGAGGCAAAGGATCGAGAAATTGTGGCAAGGAAATTGAGGGATCATGTCCTGGGAGCTAACAATAACCCTCTTCTCATATTTCCTGAAGGAACTTGTGTAAATAATCACTACTCTGTCATGTTCAAGAAGGGTGCATTTGAACTTGGCTGCACAATTTGCCCAGTTGCAATCAAGTACAATAAAATTTTCGTCGATGCTTTTTGGAATAGTCGAAAGCAATCATTCACCACTCATCTCTTGCAATTAATGACATCTTGGGCTGTAGTTTGTGATGTTTGGTACTTGGAGCCACAAAATTTGAAGCCAGGAGAGACACCCATTGAATTTGCAGAGAGAGTTAGAGACATAATCTCACATCGTGCTGGGCTTAAAAAGGTTCCTTGGGATGGATATCTGAAGTATTCTCGCCCTAGTCCCAAGCACAGAGAAGGAAAGCAACAAATATTCGCTGAGTCTGTGTTGCGGCGCTTTGAGGAAAAATAA >Glyma08g09080.5 sequence type=CDS gene model=Glyma08g09080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGGCATTGGGAAACTCAAATCGTCGAGTTCTGAATTGGACCTTCACATTGAAGATTACCTACCTTCTGGATCCAGTGTTCAACAAGAACGGCATGGCAAGCTCCGACTGTGTGATTTGCTAGACATTTCTCCTAGTCTATCTGAGGCAGCACGTGCCATTGTAGATGATACATTCACAAGGTGCTTCAAGTCAAATCCTCCAGAACCTTGGAACTGGAATGTTTATTTGTTTCCTTTGTGGTGCTGTGGAGTTGTGGTTCGATATTTGATTTTGTTCCCTATTAGGATTCTAGTGTTGGCATTAGGATGGATTATATTTCTTTCAGCCTTCATTCCAGTGCACTCCCTCCTGAAAGGAAATGATGATTTGAGGAAAAAGATTGAGAGGTGTTTGGTGGAGATGATGTGCAGTTTCTTTGTTGCATCATGGACTGGGGTTGTCAAGTACCATGGGCCAAGACCTAGTATCCGACCAAAACAGGTTTTTGTGGCCAATCATACTTCCATGATTGATTTCATTATCTTAGAACAGATGACTGCATTTGCTGTTATTATGCAGAAGCATCCTGGATGGGTTGGATTATTGCAGAGCACCATTTTGGAGAGTGTGGGGTGTATCTGGTTCAATCGTACAGAGGCAAAGGATCGAGAAATTGTGGCAAGGAAATTGAGGGATCATGTCCTGGGAGCTAACAATAACCCTCTTCTCATATTTCCTGAAGGAACTTGTGTAAATAATCACTACTCTGTCATGTTCAAGAAGGGTGCATTTGAACTTGGCTGCACAATTTGCCCAGTTGCAATCAAGTACAATAAAATTTTCGTCGATGCTTTTTGGAATAGTCGAAAGCAATCATTCACCACTCATCTCTTGCAATTAATGACATCTTGGGCTGTAGTTTGTGATGTTTGGTACTTGGAGCCACAAAATTTGAAGCCAGGAGAGACACCCATTGAATTTGCAGAGAGAGTTAGAGACATAATCTCACATCGTGCTGGGCTTAAAAAGGTTCCTTGGGATGGATATCTGAAGTATTCTCGCCCTAGTCCCAAGCACAGAGAAGGAAAGCAACAAATATTCGCTGAGTCTGTGTTGCGGCGCTTTGAGGAAAAATAA
>Glyma08g09080.2 sequence type=predicted peptide gene model=Glyma08g09080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNGIGKLKSSSSELDLHIEDYLPSGSSVQQERHGKLRLCDLLDISPSLSEAARAIVDDTFTRCFKSNPPEPWNWNVYLFPLWCCGVVVRYLILFPIRILVLALGWIIFLSAFIPVHSLLKGNDDLRKKIERCLVEMMCSFFVASWTGVVKYHGPRPSIRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRTEAKDREIVARKLRDHVLGANNNPLLIFPEGTCVNNHYSVMFKKGAFELGCTICPVAIKYNKIFVDAFWNSRKQSFTTHLLQLMTSWAVVCDVWYLEPQNLKPGETPIEFAER* >Glyma08g09080.4 sequence type=predicted peptide gene model=Glyma08g09080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNGIGKLKSSSSELDLHIEDYLPSGSSVQQERHGKLRLCDLLDISPSLSEAARAIVDDTFTRCFKSNPPEPWNWNVYLFPLWCCGVVVRYLILFPIRILVLALGWIIFLSAFIPVHSLLKGNDDLRKKIERCLVEMMCSFFVASWTGVVKYHGPRPSIRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRTEAKDREIVARKLRDHVLGANNNPLLIFPEGTCVNNHYSVMFKKGAFELGCTICPVAIKYNKIFVDAFWNSRKQSFTTHLLQLMTSWAVVCDVWYLEPQNLKPGETPIEFAERVRDIISHRAGLKKVPWDGYLKYSRPSPKHREGKQQIFAESVLRRFEEK* >Glyma08g09080.5 sequence type=predicted peptide gene model=Glyma08g09080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNGIGKLKSSSSELDLHIEDYLPSGSSVQQERHGKLRLCDLLDISPSLSEAARAIVDDTFTRCFKSNPPEPWNWNVYLFPLWCCGVVVRYLILFPIRILVLALGWIIFLSAFIPVHSLLKGNDDLRKKIERCLVEMMCSFFVASWTGVVKYHGPRPSIRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRTEAKDREIVARKLRDHVLGANNNPLLIFPEGTCVNNHYSVMFKKGAFELGCTICPVAIKYNKIFVDAFWNSRKQSFTTHLLQLMTSWAVVCDVWYLEPQNLKPGETPIEFAERVRDIISHRAGLKKVPWDGYLKYSRPSPKHREGKQQIFAESVLRRFEEK*
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