Glyma08g09050 - SoyBase

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Report for Sequence Feature Glyma08g09050

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6438747
stop:	6445980
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g09050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34560	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:14560266-14562695 FORWARD LENGTH=393	SoyBase	E_val: 0	ISS
GO:0019538	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein metabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0738	KOG	AAA+-type ATPase	JGI		ISS
PTHR23074	Panther	AAA ATPASE	JGI		ISS
PTHR23074:SF19	Panther	KATANIN-RELATED	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
UniRef100_G7JE04	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Katanin p60 ATPase-containing subunit A-like protein n=1 Tax=Medicago truncatula RepID=G7JE04_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KRH0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KRH0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g09050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g09050

Paralog	Evidence	Comments
Glyma05g26100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g09050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g085500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g09050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g09050

Limit To All Plant Sequences

>Glyma08g09050.1   sequence type=CDS   gene model=Glyma08g09050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGACGATCCAATGCCCACGCGCTGGTCTTTCCAGGACTTCAAATTGTGTTATGATGCTAAGTTTGGTAGAAAGAAAGTCGCGGAGAACGGAGATGATGCTGCCGGTAAAGCGGTCAGCAATGGAAATGGAAATTCAGTGACAGTGGCCATTGTGTCCAATGGCAACAAAAGGGCATCGGAAATGGCTGTTTATGAGCAGTTTCGAAGCGAGGGGCAGAATCAGATTCACACAAATGGCTTTGTGCCGACCCTTACAGATGAAAGGCCGCAGAAGTCTTTGCTTCCACCCTTTGAATCTGCGGAAATGCGAGCTTTAGCAGAGAGCTTAAGTAGGGATATCATTCGTGGAAGTCCAGATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTTTACTGAAAGAGGCTGTTGTGATGCCGATTAAGTATCCCAAGTACTTCACTGGTCTGTTATCACCATGGAAGGGTATCCTCCTTTTTGGCCCACCGGGGACAGGAAAGACAATGCTTGCAAAGGCAGTTGCGACAGAGTGCAATACAACTTTTTTTAATATTTCAGCCTCATCTGTAGTCAGCAAATGGCGAGGTGATTCAGAGAAGTTAGTGAAAGTGTTATTTGAACTTGCAAGGCATCATGCACCCTCAACAATATTTCTTGACGAAATTGATGCAATCATTAGTCAACGTGGTGAAGCTCGCAGTGAACACGAAGCTAGTAGACGGTTGAAAACAGAGCTTCTCATTCAGATGGATGGTTTGACAAAGACAGATGAACTGGTTTTTGTTTTAGCGGCAACAAATCTTCCCTGGGAACTGGATGCAGCCATGCTTCGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCAGAACCAGTTGCGAGAAGAGCAATGTTCGAGGAACTCCTTCCTCAACAGCCTGGCGAGGAATCGATCCCCTATGATATACTGGAGGATAAGACAGAAGGATATTCGGGATCGGATATCCGATTACTCTGTAAAGAGACAGCAATGCAACCCTTAAGACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGAGAAACACAAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTTCAATGCTGATTATGGTAGTCAAATACTACAATGA

Predicted protein sequences of Glyma08g09050

Limit To All Plant Sequences

>Glyma08g09050.1   sequence type=predicted peptide   gene model=Glyma08g09050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADDPMPTRWSFQDFKLCYDAKFGRKKVAENGDDAAGKAVSNGNGNSVTVAIVSNGNKRASEMAVYEQFRSEGQNQIHTNGFVPTLTDERPQKSLLPPFESAEMRALAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVARRAMFEELLPQQPGEESIPYDILEDKTEGYSGSDIRLLCKETAMQPLRRLMSQLEQNQDVVPEEELPKVGPIRSEDIETALRNTRPSAHLHAHKYDKFNADYGSQILQ*

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