Glyma08g08990 - SoyBase

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Report for Sequence Feature Glyma08g08990

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6392658
stop:	6395995
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18260	AT	Annotation by Michelle Graham. TAIR10: Cytochrome b561/ferric reductase transmembrane protein family \| chr4:10093524-10097337 REVERSE LENGTH=545	SoyBase	E_val: 3.00E-67	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
PTHR23130	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR23130:SF18	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03188	PFAM	Eukaryotic cytochrome b561	JGI		ISS
UniRef100_B9S130	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dopamine beta-monooxygenase, putative n=1 Tax=Ricinus communis RepID=B9S130_RICCO	SoyBase	E_val: 1.00E-84	ISS
UniRef100_I1KRG6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRG6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g08990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08990

Paralog	Evidence	Comments
Glyma05g26030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g085000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g08990

Limit To All Plant Sequences

>Glyma08g08990.2   sequence type=transcript   gene model=Glyma08g08990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTTTCTTCTGTGTCCTTTCTCCCTCCCTCCCACAGGTTAATAACTATCTGTGTACAAAACTAAAAACAACTAAGACTATTTGGCAGCATATATAAATTATTTTAAACTAGATTAGACAATCAATCACCTTGCTTATTTTGGATTGAACCTGAACAAATCGAAGCAAACAAGTAATTGAAGTAAAGAATACAATGACTAGCTACCAACAAAGTCAAGCGCAATTGGTAGATGTTGGGTTCCTGAAATATGCTGACAGGAATTCAATTCTCTGACTGTATTATTTGTGTGTATGGAGAAGATTTTGTTGGAAGAGATAAATCCAATTTCAGCGATCTCTATGTTTCGAGAGTTAGTTGCATGATTTTTAACTATGAGAATATCTTATTTTCAGAAAAGAAAATAAGATCCAGTGGCCATAGATTGATGATGTCTCTTAATTTTATCTACTTTATTACCTTTAAAAAATGTCGGTTGCAGGTCCTCAAGTCAAGTGCATTCATAGGATTTTGACCTCTTTGTTTCACAATTTCAACTCGCCCATGACATGGTACGCAAATGTCAAGCAACCCCACGTTTGAAATTGAGAAAAATATACGTCCCAAGTTTTCCATTTTATATTCTTCTTAGTTCTTAATGCTTCCAATATTTACATTCAACTAATTAGTATATTCATATTGCACATCTCATCCCTTTGTAAAGCTTCTTTATACAAAAAGTATATCAAGTCCTTCACCACACTTTTAAAAGCTCCCTTAGCCATCCCAAAAAATAATCATATCCTAAAGCATCATTGGCTTCAAAACTCATAGAGAGAGAAAGAAGTCACTGCATGGCCTATGAGGAGGAACATCACTCTAGTAGTCACAAAAGCACTAATAACAAAATTTACAAGGTAAATCAGCAGAAGACATCTGATATTGCAGTACATGGATTGCTCCTGTGGGCTTCAACCGGGTTTTTAATGCCTCTTGGCATACTTATCATCAGAGGATCCATTAAAGCAGAACCTGGATCCAGAAGGAGTATAGTTCTCTTCTATCTCCATGTTGGTTTTCAGATGCTTTCAGTGCTTCTTGCCACAGTTGGAGCTGCTATGTCCCTGAAGAAGTTTGAGAATTCATTTGATAACAGCCATCAAAAACTAGGCCTAGCACTTTATGGTGCTATATTGGTGCAAGGCTTGATTGGATTTTTCAGACCACACAGGGGAAAGAAGGAGAGAAGTTATTGGTACTTACTACATTGGATACTAGGGACAATAGTTTCTCTTGTGGGGATCATCAATATTTACACTGGATTAAAAGCCTACCATAAGAGAACCTTAAAAAGCACAACACTTTGGACTATCCTTTTCACTGTGGAAGTCTCTTTCATTGGATTAGTTTACCTCTTGCAAGACAAATTGGAATATATGAAAAAGCAAGGAGTGATTATTGGAAGTGAGTCGTCAATTGTGTCATCTAACCAAGATATTCCTCAAAGCCAAACCCAAAAGGAGTTGTTGCCAGTTGCATGTGGAAGAAAGAGAAATGCACTTGAGAATTTGTTTGATTAATCTCTGTCTTTAGATTACATTTTTTAGAGCTTGTTTTCACTTTAGTTTTTGGTGCCTGCACTTTATGCAAGTGGGAGGTGGATTTTATGAAAGGTTGGTTGATAGAGTGCATTCATCAAAAGGTGAAGTTTGATTGTGTATGTTATTTCTTTTCATTTCTTTTTTTTTATGCTTATTCTTTCACATGTATTACGAATATTATAAGTGTGCGTGTGGATACTGACCACAGAATGTATAGACAATTGTGGGAGCAGTTTGTGAATTTTAAATTTCCATTGAAAATTAAGTATGATTTTGGAATATATTACAATGTATGTATTGATGCATATGTCTTTAGGGGGTGACAATCGCAATACTTCAAACGAAAGCCTATATATGTAGGTGTTGTTTATCTACTTCCTTCAC

Coding sequences of Glyma08g08990

Limit To All Plant Sequences

>Glyma08g08990.1   sequence type=CDS   gene model=Glyma08g08990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATATCCTTTGCAAACCAATTTACATTGTTGTGGCTTCATTTTATGCTTCTGTTCTTCTATTCAGTCACTGCATGGCCTATGAGGAGGAACATCACTCTAGTAGTCACAAAAGCACTAATAACAAAATTTACAAGGTAAATCAGCAGAAGACATCTGATATTGCAGTACATGGATTGCTCCTGTGGGCTTCAACCGGGTTTTTAATGCCTCTTGGCATACTTATCATCAGAGGATCCATTAAAGCAGAACCTGGATCCAGAAGGAGTATAGTTCTCTTCTATCTCCATGTTGGTTTTCAGATGCTTTCAGTGCTTCTTGCCACAGTTGGAGCTGCTATGTCCCTGAAGAAGTTTGAGAATTCATTTGATAACAGCCATCAAAAACTAGGCCTAGCACTTTATGGTGCTATATTGGTGCAAGGCTTGATTGGATTTTTCAGACCACACAGGGGAAAGAAGGAGAGAAGTTATTGGTACTTACTACATTGGATACTAGGGACAATAGTTTCTCTTGTGGGGATCATCAATATTTACACTGGATTAAAAGCCTACCATAAGAGAACCTTAAAAAGCACAACACTTTGGACTATCCTTTTCACTGTGGAAGTCTCTTTCATTGGATTAGTTTACCTCTTGCAAGACAAATTGGAATATATGAAAAAGCAAGGAGTGATTATTGGAAGTGAGTCGTCAATTGTGTCATCTAACCAAGATATTCCTCAAAGCCAAACCCAAAAGGAGTTGTTGCCAGTTGCATGTGGAAGAAAGAGAAATGCACTTGAGAATTTGTTTGATTAA

>Glyma08g08990.2   sequence type=CDS   gene model=Glyma08g08990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTATGAGGAGGAACATCACTCTAGTAGTCACAAAAGCACTAATAACAAAATTTACAAGGTAAATCAGCAGAAGACATCTGATATTGCAGTACATGGATTGCTCCTGTGGGCTTCAACCGGGTTTTTAATGCCTCTTGGCATACTTATCATCAGAGGATCCATTAAAGCAGAACCTGGATCCAGAAGGAGTATAGTTCTCTTCTATCTCCATGTTGGTTTTCAGATGCTTTCAGTGCTTCTTGCCACAGTTGGAGCTGCTATGTCCCTGAAGAAGTTTGAGAATTCATTTGATAACAGCCATCAAAAACTAGGCCTAGCACTTTATGGTGCTATATTGGTGCAAGGCTTGATTGGATTTTTCAGACCACACAGGGGAAAGAAGGAGAGAAGTTATTGGTACTTACTACATTGGATACTAGGGACAATAGTTTCTCTTGTGGGGATCATCAATATTTACACTGGATTAAAAGCCTACCATAAGAGAACCTTAAAAAGCACAACACTTTGGACTATCCTTTTCACTGTGGAAGTCTCTTTCATTGGATTAGTTTACCTCTTGCAAGACAAATTGGAATATATGAAAAAGCAAGGAGTGATTATTGGAAGTGAGTCGTCAATTGTGTCATCTAACCAAGATATTCCTCAAAGCCAAACCCAAAAGGAGTTGTTGCCAGTTGCATGTGGAAGAAAGAGAAATGCACTTGAGAATTTGTTTGATTAA

Predicted protein sequences of Glyma08g08990

Limit To All Plant Sequences

>Glyma08g08990.1   sequence type=predicted peptide   gene model=Glyma08g08990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHILCKPIYIVVASFYASVLLFSHCMAYEEEHHSSSHKSTNNKIYKVNQQKTSDIAVHGLLLWASTGFLMPLGILIIRGSIKAEPGSRRSIVLFYLHVGFQMLSVLLATVGAAMSLKKFENSFDNSHQKLGLALYGAILVQGLIGFFRPHRGKKERSYWYLLHWILGTIVSLVGIINIYTGLKAYHKRTLKSTTLWTILFTVEVSFIGLVYLLQDKLEYMKKQGVIIGSESSIVSSNQDIPQSQTQKELLPVACGRKRNALENLFD*

>Glyma08g08990.2   sequence type=predicted peptide   gene model=Glyma08g08990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYEEEHHSSSHKSTNNKIYKVNQQKTSDIAVHGLLLWASTGFLMPLGILIIRGSIKAEPGSRRSIVLFYLHVGFQMLSVLLATVGAAMSLKKFENSFDNSHQKLGLALYGAILVQGLIGFFRPHRGKKERSYWYLLHWILGTIVSLVGIINIYTGLKAYHKRTLKSTTLWTILFTVEVSFIGLVYLLQDKLEYMKKQGVIIGSESSIVSSNQDIPQSQTQKELLPVACGRKRNALENLFD*

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