Glyma08g08970 - SoyBase

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Report for Sequence Feature Glyma08g08970

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6375232
stop:	6379286
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34470	AT	Annotation by Michelle Graham. TAIR10: urease accessory protein G \| chr2:14530900-14532411 REVERSE LENGTH=275	SoyBase	E_val: 1.00E-163	ISS
GO:0006807	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016151	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nickel cation binding	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
PF02492	PFAM	CobW/HypB/UreG, nucleotide-binding domain	JGI		ISS
UniRef100_C6T9B1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T9B1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9XGS2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ni-binding urease accessory protein UreG n=1 Tax=Glycine max RepID=Q9XGS2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g08970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g08970 not represented in the dataset	Glyma08g08970 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g08970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g084800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g08970

Limit To All Plant Sequences

>Glyma08g08970.2   sequence type=transcript   gene model=Glyma08g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAAATGTTGACTAGAGCTAATTTATTTGAGTGGAGTGGAAGTAGTAGCAAGTACGTCGTATATGTGGTTGATCTTTTGCTGGTTGTTTGTTTTGTTCCTTCCAATTGTCAGATCTGAATCACCGGACTCACTCTTCACACTCACTCACACTGAATGGCTTCTGAAGGCGACCATCACCACCACCACCACCACCATCAAGATCACGATCATCATCATCATGATCATGATCACCATCATCATCACGATGGAGAGGGAGAGACCAACTCATGGGTAGGTAAGGATGGGAAGGTGTACCATAGCCACGATGGTCTGGCGCCGCATTCTCACGAACCCATTTACTCCCCCGGCTACTTCACCAGAAGAGCTCCACCGCTTCTCAACAGAAACTTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCACAAAGCACTTCCTGAGGAAAGGATACGCGCTGTAGAAACTGGGGGTTGCCCACATGCTGCTATTCGGGAGGACATCAGTATTAATCTTGGACCGCTGGAGGAGCTTTCTAACCTCTTCAAAGCAGATATACTTCTTTGTGAATCTGGGGGAGATAACCTGGCTGCCAATTTCAGCAGGGAATTGGCTGACTATATTATTTACATAATAGACGTGTCTGGCGGTGATAAAATTCCTCGGAAAGGTGGTCCTGGAATCACGCAAGCTGATCTCCTTGTGATAAACAAGACTGACCTTGCTCCTGCAATTGGGGCTGATTTGGCAGTCATGCAGCGGGATGCTCTGCGGATGAGAGATGGAGGGCCATTTGTCTTTGCACAGGTTAGTTAAGTACATTATTTGTCGGCTTAGTAGTTTTTAAATTTTAAATTGCTGCCTAATTCTCTTAATGCCATGCCCATTGGTATATCCAAGTTTCAGCTTTTCTCTTAGGTTTGCTGTGCTCAATTTTTCTGTGCTTGC

>Glyma08g08970.3   sequence type=transcript   gene model=Glyma08g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAAATGTTGACTAGAGCTAATTTATTTGAGTGGAGTGGAAGTAGTAGCAAGTACGTCGTATATGTGGTTGATCTTTTGCTGGTTGTTTGTTTTGTTCCTTCCAATTGTCAGATCTGAATCACCGGACTCACTCTTCACACTCACTCACACTGAATGGCTTCTGAAGGCGACCATCACCACCACCACCACCACCATCAAGATCACGATCATCATCATCATGATCATGATCACCATCATCATCACGATGGAGAGGGAGAGACCAACTCATGGGTAGGTAAGGATGGGAAGGTGTACCATAGCCACGATGGTCTGGCGCCGCATTCTCACGAACCCATTTACTCCCCCGGCTACTTCACCAGAAGAGCTCCACCGCTTCTCAACAGAAACTTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCACAAAGCACTTCCTGAGGAAAGGATACGCGCTGTAGAAACTGGGGGTTGCCCACATGCTGCTATTCGGGAGGACATCAGTATTAATCTTGGACCGCTGGAGGAGCTTTCTAACCTCTTCAAAGCAGATATACTTCTTTGTGAATCTGGGGGAGATAACCTGGCTGCCAATTTCAGCAGGGAATTGGCTGACTATATTATTTACATAATAGACGTGTCTGGCGGTGATAAAATTCCTCGGAAAGGTGGTCCTGGAATCACGCAAGCTGATCTCCTTGTGATAAACAAGACTGACCTTGCTCCTGCAATTGGGGCTGATTTGGCAGTCATGCAGCGGGATGCTCTGCGGATGAGAGATGGAGGGCCATTTGTCTTTGCACAGGTGAAGCATAAGATTGGAGTAGAAGAAATTGGGAATCTTGTTCTCTCTTAACTTTATTTGCATATGTATGTGCAGGTGAAGCATAAGATTGGAGTAGAAGAAATTGGGAATCTTGTCTTGCAGGCATGGGAAGCAGCCACAGGGAATAAGCGTCATTAACATTTCTTTGAAAAACGGTTTCCTTTGTGTTGTATATTTTCTTAGCATGTTTAGTAATAACTCCAGAAACATGATGTTCACGACGTGGATTCGAGTTCTTATGTTGTGTCTGTTCCTGCATGTTACAGTATCAAGTTCATAAACATGTTACTACTTGGACCTAATCTGTATGTGCGACTCATCTTTTTCTCTGTTTTTTTGTTAAACTCCCTGATGGTGCACTTGTTTAGAAAGGAAAAAATGTACTATGAAAATGAAACTTATTCCATGCTTGCTAAGAGTTAGTTCAATAAAATGGTGACACAGTTGAAAGCAGACTGTAATTTATTTATAATTAATTAA

Coding sequences of Glyma08g08970

Limit To All Plant Sequences

>Glyma08g08970.1   sequence type=CDS   gene model=Glyma08g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGAAGGCGACCATCACCACCACCACCACCACCATCAAGATCACGATCATCATCATCATGATCATGATCACCATCATCATCACGATGGAGAGGGAGAGACCAACTCATGGGTAGGTAAGGATGGGAAGGTGTACCATAGCCACGATGGTCTGGCGCCGCATTCTCACGAACCCATTTACTCCCCCGGCTACTTCACCAGAAGAGCTCCACCGCTTCTCAACAGAAACTTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCACAAAGCACTTCCTGAGGAAAGGATACGCGCTGTAGAAACTGGGGGTTGCCCACATGCTGCTATTCGGGAGGACATCAGTATTAATCTTGGACCGCTGGAGGAGCTTTCTAACCTCTTCAAAGCAGATATACTTCTTTGTGAATCTGGGGGAGATAACCTGGCTGCCAATTTCAGCAGGGAATTGGCTGACTATATTATTTACATAATAGACGTGTCTGGCGGTGATAAAATTCCTCGGAAAGGTGGTCCTGGAATCACGCAAGCTGATCTCCTTGTGATAAACAAGACTGACCTTGCTCCTGCAATTGGGGCTGATTTGGCAGTCATGCAGCGGGATGCTCTGCGGATGAGAGATGGAGGGCCATTTGTCTTTGCACAGGTGAAGCATAAGATTGGAGTAGAAGAAATTGGGAATCTTGTCTTGCAGGCATGGGAAGCAGCCACAGGGAATAAGCGTCATTAA

>Glyma08g08970.2   sequence type=CDS   gene model=Glyma08g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGAAGGCGACCATCACCACCACCACCACCACCATCAAGATCACGATCATCATCATCATGATCATGATCACCATCATCATCACGATGGAGAGGGAGAGACCAACTCATGGGTAGGTAAGGATGGGAAGGTGTACCATAGCCACGATGGTCTGGCGCCGCATTCTCACGAACCCATTTACTCCCCCGGCTACTTCACCAGAAGAGCTCCACCGCTTCTCAACAGAAACTTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCACAAAGCACTTCCTGAGGAAAGGATACGCGCTGTAGAAACTGGGGGTTGCCCACATGCTGCTATTCGGGAGGACATCAGTATTAATCTTGGACCGCTGGAGGAGCTTTCTAACCTCTTCAAAGCAGATATACTTCTTTGTGAATCTGGGGGAGATAACCTGGCTGCCAATTTCAGCAGGGAATTGGCTGACTATATTATTTACATAATAGACGTGTCTGGCGGTGATAAAATTCCTCGGAAAGGTGGTCCTGGAATCACGCAAGCTGATCTCCTTGTGATAAACAAGACTGACCTTGCTCCTGCAATTGGGGCTGATTTGGCAGTCATGCAGCGGGATGCTCTGCGGATGAGAGATGGAGGGCCATTTGTCTTTGCACAGGTTAGTTAA

>Glyma08g08970.3   sequence type=CDS   gene model=Glyma08g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGAAGGCGACCATCACCACCACCACCACCACCATCAAGATCACGATCATCATCATCATGATCATGATCACCATCATCATCACGATGGAGAGGGAGAGACCAACTCATGGGTAGGTAAGGATGGGAAGGTGTACCATAGCCACGATGGTCTGGCGCCGCATTCTCACGAACCCATTTACTCCCCCGGCTACTTCACCAGAAGAGCTCCACCGCTTCTCAACAGAAACTTCAACGAAAGAGCCTTCACCGTCGGAATCGGTGGACCCGTCGGTACTGGCAAAACAGCTCTCATGTTGGCCCTTTGTGAACTCTTGCGCGAAAACTACAGTCTCGCAGCTGTGACAAATGATATATTCACTAAAGAGGATGGTGAGTTCTTGGTGAAGCACAAAGCACTTCCTGAGGAAAGGATACGCGCTGTAGAAACTGGGGGTTGCCCACATGCTGCTATTCGGGAGGACATCAGTATTAATCTTGGACCGCTGGAGGAGCTTTCTAACCTCTTCAAAGCAGATATACTTCTTTGTGAATCTGGGGGAGATAACCTGGCTGCCAATTTCAGCAGGGAATTGGCTGACTATATTATTTACATAATAGACGTGTCTGGCGGTGATAAAATTCCTCGGAAAGGTGGTCCTGGAATCACGCAAGCTGATCTCCTTGTGATAAACAAGACTGACCTTGCTCCTGCAATTGGGGCTGATTTGGCAGTCATGCAGCGGGATGCTCTGCGGATGAGAGATGGAGGGCCATTTGTCTTTGCACAGGTGAAGCATAAGATTGGAGTAGAAGAAATTGGGAATCTTGTTCTCTCTTAA

Predicted protein sequences of Glyma08g08970

Limit To All Plant Sequences

>Glyma08g08970.1   sequence type=predicted peptide   gene model=Glyma08g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASEGDHHHHHHHHQDHDHHHHDHDHHHHHDGEGETNSWVGKDGKVYHSHDGLAPHSHEPIYSPGYFTRRAPPLLNRNFNERAFTVGIGGPVGTGKTALMLALCELLRENYSLAAVTNDIFTKEDGEFLVKHKALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADILLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLAPAIGADLAVMQRDALRMRDGGPFVFAQVKHKIGVEEIGNLVLQAWEAATGNKRH*

>Glyma08g08970.2   sequence type=predicted peptide   gene model=Glyma08g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASEGDHHHHHHHHQDHDHHHHDHDHHHHHDGEGETNSWVGKDGKVYHSHDGLAPHSHEPIYSPGYFTRRAPPLLNRNFNERAFTVGIGGPVGTGKTALMLALCELLRENYSLAAVTNDIFTKEDGEFLVKHKALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADILLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLAPAIGADLAVMQRDALRMRDGGPFVFAQVS*

>Glyma08g08970.3   sequence type=predicted peptide   gene model=Glyma08g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASEGDHHHHHHHHQDHDHHHHDHDHHHHHDGEGETNSWVGKDGKVYHSHDGLAPHSHEPIYSPGYFTRRAPPLLNRNFNERAFTVGIGGPVGTGKTALMLALCELLRENYSLAAVTNDIFTKEDGEFLVKHKALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADILLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLAPAIGADLAVMQRDALRMRDGGPFVFAQVKHKIGVEEIGNLVLS*

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