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Report for Sequence Feature Glyma08g08940

Feature Type:gene_model
Chromosome:Gm08
Start:6366832
stop:6369220
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g08940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G34460AT Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr2:14529635-14530732 FORWARD LENGTH=280 SoyBaseE_val: 8.00E-141ISS
GO:0010264GO-bp Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0010287GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
KOG1203 KOG Predicted dehydrogenase JGI ISS
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI ISS
PTHR10366:SF135Panther SUBFAMILY NOT NAMED JGI ISS
PF01370PFAM NAD dependent epimerase/dehydratase family JGI ISS
UniRef100_B6U1C8UniRef Annotation by Michelle Graham. Most informative UniRef hit: 3-beta hydroxysteroid dehydrogenase/isomerase n=1 Tax=Zea mays RepID=B6U1C8_MAIZE SoyBaseE_val: 2.00E-111ISS
UniRef100_C6TJN4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJN4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g08940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08940
ParalogEvidenceComments
Glyma05g26000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g084600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g08940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g08940
>Glyma08g08940.1   sequence type=CDS   gene model=Glyma08g08940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATGGCTGCGACTCTCACTGCTGTAAGAATTCCCACTTTCCACCAACGCCATCTCAGAAAACATTTCACTGCACCTTCTTCTTCCTTACGCCTCCTCAATCTCGCAAAGATGGAAGGAAGTGAGATCAGTGAGCAAGTGGGAGAGGATTTGGGAGCAAAGAAGAAAGTTTTTGTAGCTGGAGCCACTGGTAGCACCGGCAAAAGAATCGTTGAGCAGTTACTCGCAAAGGGCTTTGCTGTTAAGGCTGGGGTTAGAGACGTCGACAAGGCCAAGACAACCCTTTCATCTGCCAACCCTTCTCTTCAAATTGTGAAAGCTGATGTCACAGAGGGTTCTGATAAGCTAGCTGAGGCCATTGGTGATGATTCAGAAGCAGTAGTGTGTGCCACAGGCTTTCGCCCGGGGTGGGATTTGCTTGCTCCATGGAAGGTTGACAATTTTGGCACAGTAAACCTCGTTGAAGCATGCAGGAAACGTAATGTTAACAGATTCATTCTTATCAGTTCCATTTTAGTTAATGGAGCTGCTATGGGACAATTATTCAATCCGGCTTACATCTTTCTTAATGTTTTTGGACTCACCTTAGTAGCAAAACTACAGGCAGAGAAATATATCAGGAAATCCGGTATAAACTACACAATAATAAGACCTGGTGGGTTGAGAAACGATCCTCCTACTGGAAATATAGTTATGGAGCCTGAGGACACCCTTTATGAAGGTTCCATATCCAGATCTTTAGTTGCTGAAGTGGCTGTGGAGGCATTGGCTTATCCTGAGGCATCTTATAAAGTTGTGGAAATAGTGTCTCGCCCTGATGCTCCTAAACGCCCGTACCATGACCTTTTTGGATCCATAAGGCAACAATAA
Predicted protein sequences of Glyma08g08940
>Glyma08g08940.1   sequence type=predicted peptide   gene model=Glyma08g08940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMAATLTAVRIPTFHQRHLRKHFTAPSSSLRLLNLAKMEGSEISEQVGEDLGAKKKVFVAGATGSTGKRIVEQLLAKGFAVKAGVRDVDKAKTTLSSANPSLQIVKADVTEGSDKLAEAIGDDSEAVVCATGFRPGWDLLAPWKVDNFGTVNLVEACRKRNVNRFILISSILVNGAAMGQLFNPAYIFLNVFGLTLVAKLQAEKYIRKSGINYTIIRPGGLRNDPPTGNIVMEPEDTLYEGSISRSLVAEVAVEALAYPEASYKVVEIVSRPDAPKRPYHDLFGSIRQQ*






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