Glyma08g08885 - SoyBase

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Report for Sequence Feature Glyma08g08885

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6334308
stop:	6343029
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08885

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G59090	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). \| chr3:21839334-21842348 FORWARD LENGTH=367	SoyBase	E_val: 9.00E-99	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PF06454	PFAM	Protein of unknown function (DUF1084)	JGI		ISS
UniRef100_B9DFZ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3G59090 protein n=1 Tax=Arabidopsis thaliana RepID=B9DFZ1_ARATH	SoyBase	E_val: 4.00E-96	ISS
UniRef100_UPI00023399A9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023399A9 related cluster n=1 Tax=unknown RepID=UPI00023399A9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g08885

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g08885 not represented in the dataset	Glyma08g08885 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08885

Paralog	Evidence	Comments
Glyma05g25941	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08885 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g084000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08885

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g08885

Limit To All Plant Sequences

>Glyma08g08885.2   sequence type=transcript   gene model=Glyma08g08885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAATCAGATGATTTAAAAGCCAAAATACACATGAGATTATGATATGAGAGTCAAAGCAGGAAGTCAACGGAAGGAGCGAGTTTTATTTAAAAAAAACAAAAAAGAAGACCTAAAAAGGACAATGTTTATGTGACAGAAAGGAGGAAAGGAAGAGATTCAAGAGAAGAAAGGAAAGCGAAAGTGTGTCACGTTTTGTTGATGCTGTTGCTGTGAATGAATCTGCGATACGATACGCACACACATCATCATCATCGCCACATGCATATTATGCGTATATACGCGTAGATCTGATAAAGAAAGTAGAAAGAACAGACAGAAGAAGAAGAAGAAGAACGAGGCCATGTCGGGATTCAGAGACGCTCGCTGTTTTCCGCGTCCAATCCTCGCTGTGAATCTCGCCCTCGCTCTTCTCCACGTTGTCGTTGCGTTCCTCGCGTTCTTTCAGTTGCTGAGAATTCACATGAGGAATGCGCAGCTTGGTTGGACTCGTCAAAAAGTGTTCCATGTATTGATTGGCTCTTCTAATTTGGGTTACGTCATTTATTTGGCATTGACACTTGTTGCTGCCTGCAAGGGATGGACCTGTTGGTCGCATTCTTGTGGTTTTGTATTTATGGCTTTCCCCAAAGTACTTTTTTTTGCAGCATTTCTTCTTCTTTTATCCTTCTGGGTTGACCTTTGCCATCAGGCAGATGATGATGATGACTATGAAGGAAGTTTTTGTGATAACCCTTTGCTGGAAAAGACTTCAAATGAATCAAATTTAGCAAGCATAGATAGCCATAGAAAGTGTTTTCCTTTTTGGTTTGCTCGTGTTGGAAATCGGCAAAAGATTGTGATTTTGGTTACTTTGCTAGTTTTCATCATCGTGGTTGCTTTTGCTGTAGTAATCTGGATTGGGTTAGGAAAGAATCCCATTGATTCTGAAGTGGCAGCTCGGATATATTTATATCTTTCTGCTATTGGAATGCTTTTGTTGGGAGGAGCATTAGCATGTTATGGAATTCTATTATGCTTGAAAATGAGCAGAGTGAGAGCCGAGAAACCTTCATCTGAAATGTGGAAGGTTGCAGGTTTAACTATTGTCTCTGTACTATGCTTCACATCAAGTTCCTGTGTAGAACTTTTAACCGATATCCCTATGCAGTATAACTGGCATCTGCGGCGTCTGAATGATGTTTACTCCTCGCTTTTACTCATTTTGTATTATTTTGTGGGTTCATCAATACCTTCAGCATTGGTACTGTGGGTAATGAGAGAATTACCACCTGAAGAAGCTGCTAGCATATCTGAAGAATCAAGTACAATAGCTTTTGTTGCTGATAGTTCAATTGCAATCCATCATCCTCAACGCTGGACTACAGCAACAAGCATGCAGAATCAGGCAGCACTTTAAGATTCACATTCATATTGTTCCTACAAGTGTCATCGTACAAGACATCAAGAGCGAGTCCTATATGATTATGCGTTAACATTTGCAAATATATCTTGTTCTGCTGGAGTTTGGACGGCTTAATGAAATTTTCTCAGAATGTTTAAACCCTAGAGTGCAGATGGGAGAAAATGATGATGATGATGGATGCAAGTGCTTATGGAGGTTTCCCTTCCAACTGTATTTACAATCTAAATCTAAATGTATATAGCAGCAATTTGATATATGAAAAATTCTTTTCTTTCCATACAAATTTTGGTACACTACTGTTTCAATGCTGGTTGAGTATTTTTCTGAGTTTGAATAATTCCCTTCTGATGTGAATATGACTGTTGCCAAGTGAGCATGTTCTTCTAGCCTGCTTGCAAGCTGAATTAATCTGTCTCAAGAAAGATTTTTTTGAAAAATTA

>Glyma08g08885.3   sequence type=transcript   gene model=Glyma08g08885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCGATGCCCTTCCACTAAATCAGCGAAAGTGTGTCACGTTTTGTTGATGCTGTTGCTGTGAATGAATCTGCGATACGATACGCACACACATCATCATCATCGCCACATGCATATTATGCGTATATACGCGTAGATCTGATAAAGAAAGTAGAAAGAACAGACAGAAGAAGAAGAAGAAGAACGAGGCCATGTCGGGATTCAGAGACGCTCGCTGTTTTCCGCGTCCAATCCTCGCTGTGAATCTCGCCCTCGCTCTTCTCCACGTTGTCGTTGCGTTCCTCGCGTTCTTTCAGTTGCTGAGAATTCACATGAGGAATGCGCAGCTTGGTTGGACTCGTCAAAAAGTGTTCCATGTATTGATTGGCTCTTCTAATTTGGGTTACGTCATTTATTTGGCATTGACACTTGTTGCTGCCTGCAAGGGATGGACCTGTTGGTCGCATTCTTGTGGTTTTGTATTTATGGCTTTCCCCAAAGTACTTTTTTTTGCAGCATTTCTTCTTCTTTTATCCTTCTGGGTTGACCTTTGCCATCAGGCAGATGATGATGATGACTATGAAGGAAGTTTTTGTGATAACCCTTTGCTGGAAAAGACTTCAAATGAATCAAATTTAGCAAGCATAGATAGCCATAGAAAGTGTTTTCCTTTTTGGTTTGCTCGTGTTGGAAATCGGCAAAAGATTGTGATTTTGGTTACTTTGCTAGTTTTCATCATCGTGGTTGCTTTTGCTGTAGTAATCTGGATTGGGTTAGGAAAGAATCCCATTGATTCTGAAGTGGCAGCTCGGATATATTTATATCTTTCTGCTATTGGAATGCTTTTGTTGGGAGGAGCATTAGCATGTTATGGAATTCTATTATGCTTGAAAATGAGCAGAGTGAGAGCCGAGAAACCTTCATCTGAAATGTGGAAGGTTGCAGGTTTAACTATTGTCTCTGTACTATGCTTCACATCAAGTTCCTGTGTAGAACTTTTAACCGATATCCCTATGCAGTATAACTGGCATCTGCGGCGTCTGAATGATGTTTACTCCTCGCTTTTACTCATTTTGTATTATTTTGTGGGTTCATCAATACCTTCAGCATTGGTACTGTGGGTAATGAGAGAATTACCACCTGAAGAAGCTGCTAGCATATCTGAAGAATCAAGTACAATAGCTTTTGTTGCTGATAGTTCAATTGCAATCCATCATCCTCAACGCTGGACTACAGCAACAAGCATGCAGAATCAGGCAGCACTTTAAGATTCACATTCATATTGTTCCTACAAGTGTCATCGTACAAGACATCAAGAGCGAGTCCTATATGATTATGCGTTAACATTTGCAAATATATCTTGTTCTGCTGGAGTTTGGACGGCTTAATGAAATTTTCTCAGAATGTTTAAACCCTAGAGTGCAGATGGGAGAAAATGATGATGATGATGGATGCAAGTGCTTATGGAGGTTTCCCTTCCAACTGTATTTACAATCTAAATCTAAATGTATATAGCAGCAATTTGATATATGAAAAATTCTTTTCTTTCCATACAAATTTTGGTACACTACTGTTTCAATGCTGGTTGAGTATTTTTCTGAGTTTGAATAATTCCCTTCTGATGTGAATATGACTGTTGCCAAGTGAGCATGTTCTTCTAGCCTGCTTGCAAGCTGAATTAATCTGTCTCAAGAAAGATTTTTTTGAAAAATTA

Coding sequences of Glyma08g08885

Limit To All Plant Sequences

>Glyma08g08885.1   sequence type=CDS   gene model=Glyma08g08885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGGATTCAGAGACGCTCGCTGTTTTCCGCGTCCAATCCTCGCTGTGAATCTCGCCCTCGCTCTTCTCCACGTTGTCGTTGCGTTCCTCGCGTTCTTTCAGTTGCTGAGAATTCACATGAGGAATGCGCAGCTTGGTTGGACTCGTCAAAAAGTGTTCCATGTATTGATTGGCTCTTCTAATTTGGGTTACGTCATTTATTTGGCATTGACACTTGTTGCTGCCTGCAAGGGATGGACCTGTTGGTCGCATTCTTGTGGTTTTGTATTTATGGCTTTCCCCAAAGTACTTTTTTTTGCAGCATTTCTTCTTCTTTTATCCTTCTGGGTTGACCTTTGCCATCAGGCAGATGATGATGATGACTATGAAGGAAGTTTTTGTGATAACCCTTTGCTGGAAAAGACTTCAAATGAATCAAATTTAGCAAGCATAGATAGCCATAGAAAGTGTTTTCCTTTTTGGTTTGCTCGTGTTGGAAATCGGCAAAAGATTGTGATTTTGGTTACTTTGCTAGTTTTCATCATCGTGGTTGCTTTTGCTGTAGTAATCTGGATTGGGTTAGGAAAGAATCCCATTGATTCTGAAGTGGCAGCTCGGATATATTTATATCTTTCTGCTATTGGAATGCTTTTGTTGGGAGGAGCATTAGCATGTTATGGAATTCTATTATGCTTGAAAATGAGCAGAGTGAGAGCCGAGAAACCTTCATCTGAAATGTGGAAGGTTGCAGGTTTAACTATTGTCTCTGTACTATGCTTCACATCAAGTTCCTGTGTAGAACTTTTAACCGATATCCCTATGCAGTATAACTGGCATCTGCGGCGTCTGAATGATGTTTACTCCTCGCTTTTACTCATTTTGTATTATTTTGTGGGTTCATCAATACCTTCAGCATTGGTACTGTGGGTAATGAGAGAATTACCACCTGAAGAAGCTGCTAGCATATCTGAAGAATCAAGTACAATAGCTTTTGTTGCTGATAGTTCAATTGCAATCCATCATCCTCAACGCTGGACTACAGCAACAAGCATGCAGAATCAGACATCAAGAGCGAGTCCTATATGA

>Glyma08g08885.2   sequence type=CDS   gene model=Glyma08g08885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGGATTCAGAGACGCTCGCTGTTTTCCGCGTCCAATCCTCGCTGTGAATCTCGCCCTCGCTCTTCTCCACGTTGTCGTTGCGTTCCTCGCGTTCTTTCAGTTGCTGAGAATTCACATGAGGAATGCGCAGCTTGGTTGGACTCGTCAAAAAGTGTTCCATGTATTGATTGGCTCTTCTAATTTGGGTTACGTCATTTATTTGGCATTGACACTTGTTGCTGCCTGCAAGGGATGGACCTGTTGGTCGCATTCTTGTGGTTTTGTATTTATGGCTTTCCCCAAAGTACTTTTTTTTGCAGCATTTCTTCTTCTTTTATCCTTCTGGGTTGACCTTTGCCATCAGGCAGATGATGATGATGACTATGAAGGAAGTTTTTGTGATAACCCTTTGCTGGAAAAGACTTCAAATGAATCAAATTTAGCAAGCATAGATAGCCATAGAAAGTGTTTTCCTTTTTGGTTTGCTCGTGTTGGAAATCGGCAAAAGATTGTGATTTTGGTTACTTTGCTAGTTTTCATCATCGTGGTTGCTTTTGCTGTAGTAATCTGGATTGGGTTAGGAAAGAATCCCATTGATTCTGAAGTGGCAGCTCGGATATATTTATATCTTTCTGCTATTGGAATGCTTTTGTTGGGAGGAGCATTAGCATGTTATGGAATTCTATTATGCTTGAAAATGAGCAGAGTGAGAGCCGAGAAACCTTCATCTGAAATGTGGAAGGTTGCAGGTTTAACTATTGTCTCTGTACTATGCTTCACATCAAGTTCCTGTGTAGAACTTTTAACCGATATCCCTATGCAGTATAACTGGCATCTGCGGCGTCTGAATGATGTTTACTCCTCGCTTTTACTCATTTTGTATTATTTTGTGGGTTCATCAATACCTTCAGCATTGGTACTGTGGGTAATGAGAGAATTACCACCTGAAGAAGCTGCTAGCATATCTGAAGAATCAAGTACAATAGCTTTTGTTGCTGATAGTTCAATTGCAATCCATCATCCTCAACGCTGGACTACAGCAACAAGCATGCAGAATCAGGCAGCACTTTAA

>Glyma08g08885.3   sequence type=CDS   gene model=Glyma08g08885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGGATTCAGAGACGCTCGCTGTTTTCCGCGTCCAATCCTCGCTGTGAATCTCGCCCTCGCTCTTCTCCACGTTGTCGTTGCGTTCCTCGCGTTCTTTCAGTTGCTGAGAATTCACATGAGGAATGCGCAGCTTGGTTGGACTCGTCAAAAAGTGTTCCATGTATTGATTGGCTCTTCTAATTTGGGTTACGTCATTTATTTGGCATTGACACTTGTTGCTGCCTGCAAGGGATGGACCTGTTGGTCGCATTCTTGTGGTTTTGTATTTATGGCTTTCCCCAAAGTACTTTTTTTTGCAGCATTTCTTCTTCTTTTATCCTTCTGGGTTGACCTTTGCCATCAGGCAGATGATGATGATGACTATGAAGGAAGTTTTTGTGATAACCCTTTGCTGGAAAAGACTTCAAATGAATCAAATTTAGCAAGCATAGATAGCCATAGAAAGTGTTTTCCTTTTTGGTTTGCTCGTGTTGGAAATCGGCAAAAGATTGTGATTTTGGTTACTTTGCTAGTTTTCATCATCGTGGTTGCTTTTGCTGTAGTAATCTGGATTGGGTTAGGAAAGAATCCCATTGATTCTGAAGTGGCAGCTCGGATATATTTATATCTTTCTGCTATTGGAATGCTTTTGTTGGGAGGAGCATTAGCATGTTATGGAATTCTATTATGCTTGAAAATGAGCAGAGTGAGAGCCGAGAAACCTTCATCTGAAATGTGGAAGGTTGCAGGTTTAACTATTGTCTCTGTACTATGCTTCACATCAAGTTCCTGTGTAGAACTTTTAACCGATATCCCTATGCAGTATAACTGGCATCTGCGGCGTCTGAATGATGTTTACTCCTCGCTTTTACTCATTTTGTATTATTTTGTGGGTTCATCAATACCTTCAGCATTGGTACTGTGGGTAATGAGAGAATTACCACCTGAAGAAGCTGCTAGCATATCTGAAGAATCAAGTACAATAGCTTTTGTTGCTGATAGTTCAATTGCAATCCATCATCCTCAACGCTGGACTACAGCAACAAGCATGCAGAATCAGGCAGCACTTTAA

Predicted protein sequences of Glyma08g08885

Limit To All Plant Sequences

>Glyma08g08885.1   sequence type=predicted peptide   gene model=Glyma08g08885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGFRDARCFPRPILAVNLALALLHVVVAFLAFFQLLRIHMRNAQLGWTRQKVFHVLIGSSNLGYVIYLALTLVAACKGWTCWSHSCGFVFMAFPKVLFFAAFLLLLSFWVDLCHQADDDDDYEGSFCDNPLLEKTSNESNLASIDSHRKCFPFWFARVGNRQKIVILVTLLVFIIVVAFAVVIWIGLGKNPIDSEVAARIYLYLSAIGMLLLGGALACYGILLCLKMSRVRAEKPSSEMWKVAGLTIVSVLCFTSSSCVELLTDIPMQYNWHLRRLNDVYSSLLLILYYFVGSSIPSALVLWVMRELPPEEAASISEESSTIAFVADSSIAIHHPQRWTTATSMQNQTSRASPI*

>Glyma08g08885.2   sequence type=predicted peptide   gene model=Glyma08g08885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGFRDARCFPRPILAVNLALALLHVVVAFLAFFQLLRIHMRNAQLGWTRQKVFHVLIGSSNLGYVIYLALTLVAACKGWTCWSHSCGFVFMAFPKVLFFAAFLLLLSFWVDLCHQADDDDDYEGSFCDNPLLEKTSNESNLASIDSHRKCFPFWFARVGNRQKIVILVTLLVFIIVVAFAVVIWIGLGKNPIDSEVAARIYLYLSAIGMLLLGGALACYGILLCLKMSRVRAEKPSSEMWKVAGLTIVSVLCFTSSSCVELLTDIPMQYNWHLRRLNDVYSSLLLILYYFVGSSIPSALVLWVMRELPPEEAASISEESSTIAFVADSSIAIHHPQRWTTATSMQNQAAL*

>Glyma08g08885.3   sequence type=predicted peptide   gene model=Glyma08g08885   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGFRDARCFPRPILAVNLALALLHVVVAFLAFFQLLRIHMRNAQLGWTRQKVFHVLIGSSNLGYVIYLALTLVAACKGWTCWSHSCGFVFMAFPKVLFFAAFLLLLSFWVDLCHQADDDDDYEGSFCDNPLLEKTSNESNLASIDSHRKCFPFWFARVGNRQKIVILVTLLVFIIVVAFAVVIWIGLGKNPIDSEVAARIYLYLSAIGMLLLGGALACYGILLCLKMSRVRAEKPSSEMWKVAGLTIVSVLCFTSSSCVELLTDIPMQYNWHLRRLNDVYSSLLLILYYFVGSSIPSALVLWVMRELPPEEAASISEESSTIAFVADSSIAIHHPQRWTTATSMQNQAAL*

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