Report for Sequence Feature Glyma08g08850
Feature Type: gene_model
Chromosome: Gm08
Start: 6316129
stop: 6320266
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g08850
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
PF04481 PFAM
Protein of unknown function (DUF561)
JGI ISS
UniRef100_I1KRE9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRE9_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q8YSS1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: All3013 protein n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YSS1_NOSS1
SoyBase E_val: 8.00E-93 ISS
Expression Patterns of Glyma08g08850
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g08850
Paralog Evidence Comments
Glyma05g25910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g08850 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g083700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g08850
Coding sequences of Glyma08g08850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g08850.1 sequence type=CDS gene model=Glyma08g08850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTATTCCTTAACATGCACACCACTTTCTTCTTCTTCTTATTCTCATCACACCACTCTAAAGCCAAACCTCAACCCTCTTCTGGGTGCAGATGCAACTTCTAGGCCATGTTCTCTACCCTTGAAAAGAAGAACATGCTTTACTACCAAAGCCATTCTCTCATCCACCAGAGAAGATGTCTTGAAGCATTTCAACGAACGACGAGCTCTCAAGATTATCTCAGGCTTGCAGAATTTCAATAAAGACAATGTTGCCTCGGTTGTCACTGCTGCAGACAAGGGTGGAGCAACTCTCGTGGATATAGCATGTGACCCTGAGTTGGTAAAGCTGGCCATTGACTTAACTTCTTGTCCGGTTTGTGTTTCTTCTGTAGATCCTGCAACATTTCCAGCTGCAGTTGAAGCAGGAGCACTAATGGTTGAGATTGGAAACTATGATTCATTCTACGAGAAGGGAATAATTTTCACTCCAGAGAAGATTCTAGGTCTAACAAAGGAGACAAGGAGGATACTTCCATCTGTAGTCTTGTCTGTTACTGTTCCTCACACACTAAGCCTCCCTGATCAGGTCAAGCTTGCAGAGTCATTGGAACAAGAAGGTGTAGATATCATTCAAACTGAGGGAGGAAAATGTTCTAATCCCACACAATCTGGTGTTATGGGTTTGATTGAGAAGGCAACGCCAACTTTAGCAGCAGCGTATTCTATATCACGCGCTGTTAAGATCCCTGTCATGTGCTCTTCGGGGTTAAGCACTGTCACAGTACCGATGGCTATAACAGCTGGAGCTGCTGGTGTGGGTGTAGGCTCTGCAGTTAATAGACTTAATGATGTGGTTGCTATGATTGCTGAGGTCAGAAGCATTGCTAATTCATTGCAGACACCATTTCAGATATCCACTGCACATGAAGTGGAAACTCAAAGACAGTAG
Predicted protein sequences of Glyma08g08850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g08850.1 sequence type=predicted peptide gene model=Glyma08g08850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MYSLTCTPLSSSSYSHHTTLKPNLNPLLGADATSRPCSLPLKRRTCFTTKAILSSTREDVLKHFNERRALKIISGLQNFNKDNVASVVTAADKGGATLVDIACDPELVKLAIDLTSCPVCVSSVDPATFPAAVEAGALMVEIGNYDSFYEKGIIFTPEKILGLTKETRRILPSVVLSVTVPHTLSLPDQVKLAESLEQEGVDIIQTEGGKCSNPTQSGVMGLIEKATPTLAAAYSISRAVKIPVMCSSGLSTVTVPMAITAGAAGVGVGSAVNRLNDVVAMIAEVRSIANSLQTPFQISTAHEVETQRQ*