SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G05740 | AT | Annotation by Michelle Graham. TAIR10: RECQ helicase l1 | chr3:1698180-1701228 FORWARD LENGTH=606 | SoyBase | E_val: 4.00E-49 | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
| GO:0042631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation | SoyBase | N/A | ISS |
| GO:0070417 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to cold | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| PTHR13710 | Panther | DNA HELICASE RECQ FAMILY MEMBER | JGI | ISS | |
| PTHR13710:SF13 | Panther | RECQ HELICASE 5 | JGI | ISS | |
| UniRef100_G7I9G1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Bloom syndrome protein-like protein n=1 Tax=Medicago truncatula RepID=G7I9G1_MEDTR | SoyBase | E_val: 6.00E-61 | ISS |
| UniRef100_I1KRE7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRE7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g08830 not represented in the dataset |
Glyma08g08830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g083500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g08830.1 sequence type=CDS gene model=Glyma08g08830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCTGCCTTGGCCGGTATTTAACAGCATTGACATTCACCGAATCATGTTGAACACTAAAAAAGGCCATTCATCTTTAATTGTTGTGACATTTAAACATGATTTTCTTGTGATAGTTTCCTTTCCTTGCTTCTGGCTTGATTTATTGGAGGATTTTGATAAAGAATTTCAAGAGCAGAATTTAGGTGTAAAGTCAAGGTGTGATTGGGATAAAGTTTTGTTGTTCTTGTTGGAAGGACAAGATAGTGTGGGGTTTTATAGAGCCTTGGACTCCCTCAACTACAAAATCTACCTTTTGTGGTGTGTTTCTCCTAAAGAGAAGGTTAAATACTATGATATAGCCTCAGAAAAACGTATAGAATTTGATAGAGCAATGGCAAAATTTAACAATAAAATGGTAAGCAATCACTCATTTTCCTTGCTATTGAGTTGTCTCTTATTTGCCCGGTTATGGAATATTCAATTTATTTTCTGCTGCTTGGCAGGAAAGTGGGGGAGTTTGACGAAATTGGCAATTTCTTTGTTTACATCAATGGGGATACAGGGATTGGGATCTCTTAAGCTACACTTTCCAGATGTACCTGTCATGGCATTGACTGCCACTGCAACGCATGCAGTTCGTGAGGACATCTTGAAGGCTTTAAGAATTCCCCATGCACTTGTTCTTGAAAGAAGCTTTGACCGACCAAATTTGAAATATGAAGTGATTGCTAAGACAAAGGAGCCAATAAAGCAGCTTGGACAGTTACTAATTGATCGCTTCAGGAATCAATGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGCTCTCCAAATTATTGAGTGAGAAATGCAAGATCAAAACAGTGTATTATCATTCTGGCTTGTCTGCCCACCAGAGAGTAGCCGTTAAAAAAAAAATGGTAATGATGGAGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGAATGTGGATAG
>Glyma08g08830.1 sequence type=predicted peptide gene model=Glyma08g08830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALPWPVFNSIDIHRIMLNTKKGHSSLIVVTFKHDFLVIVSFPCFWLDLLEDFDKEFQEQNLGVKSRCDWDKVLLFLLEGQDSVGFYRALDSLNYKIYLLWCVSPKEKVKYYDIASEKRIEFDRAMAKFNNKMVSNHSFSLLLSCLLFARLWNIQFIFCCLAGKWGSLTKLAISLFTSMGIQGLGSLKLHFPDVPVMALTATATHAVREDILKALRIPHALVLERSFDRPNLKYEVIAKTKEPIKQLGQLLIDRFRNQCGIVYCLSKSECVELSKLLSEKCKIKTVYYHSGLSAHQRVAVKKKMVMMERSILYVQLLLLECG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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