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Report for Sequence Feature Glyma08g08810

Feature Type:gene_model
Chromosome:Gm08
Start:6278628
stop:6284192
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g08810
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G46330AT Annotation by Michelle Graham. TAIR10: Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006898GO-bp Annotation by Michelle Graham. GO Biological Process: receptor-mediated endocytosis SoyBaseN/AISS
GO:0007169GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway SoyBaseN/AISS
GO:0010359GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity SoyBaseN/AISS
GO:0016045GO-bp Annotation by Michelle Graham. GO Biological Process: detection of bacterium SoyBaseN/AISS
GO:0016310GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorylation SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0052544GO-bp Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition in cell wall SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004675GO-mf Annotation by Michelle Graham. GO Molecular Function: transmembrane receptor protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF841Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF08263PFAM Leucine rich repeat N-terminal domain JGI ISS
UniRef100_G8G288UniRef Annotation by Michelle Graham. Most informative UniRef hit: Flagellin-sensing 2-like protein n=1 Tax=Lotus japonicus RepID=G8G288_LOTJA SoyBaseE_val: 0ISS
UniRef100_UPI00023392A8UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023392A8 related cluster n=1 Tax=unknown RepID=UPI00023392A8 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g08810
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08810
ParalogEvidenceComments
Glyma05g25830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08810 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g083300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g08810
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g08810
>Glyma08g08810.1   sequence type=CDS   gene model=Glyma08g08810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTCCCTAAAGATTAGTTTGACTATAGGCATAGTCCTTTCCATTGTATCCATAGTTTCCCATGCTGAAACAAGCTTGGATGTTGAAATTCAAGCATTGAAAGCTTTCAAGAACTCCATCACTGGTGACCCAAGTGGGGCTCTTGCAGATTGGGTTGACAGTCACCACCACTGCAACTGGTCTGGCATTGCATGTGATCCATCTTCAAGTCATGTCATTTCAATTTCCCTGGTTAGTCTTCAGCTCCAAGGGGAGATTTCACCTTTCCTTGGAAACATTTCAGGCCTTCAGGTTCTTGATTTAACTTCAAACTCATTCACTGGCTACATTCCTGCTCAGCTCAGTTTTTGCACTCATCTTTCTACACTATCTCTTTTTGAAAATTCTCTCTCAGGTCCTATTCCTCCTGAATTAGGAAATCTTAAAAGCCTGCAGTATTTGGATTTAGGTAACAATTTCTTGAATGGAAGCCTCCCTGACAGCATATTCAACTGCACTTCTTTGTTGGGAATTGCTTTTACTTTCAACAACCTTACTGGCAGAATCCCATCAAACATTGGGAATCTAGTTAATGCTACACAGATTTTAGGTTATGGAAATAACTTGGTAGGGTCTATACCTCTTTCCATAGGTCAGTTAGTAGCTTTGCGAGCTCTTGATTTTAGCCAGAACAAGTTATCAGGTGTAATACCTCGAGAGATTGGAAATCTGACAAATTTAGAATACCTTCTATTGTTCCAAAATTCCTTGAGTGGGAAAATCCCTTCCGAGATTGCTAAGTGTAGCAAGCTTTTAAACCTTGAGTTTTATGAAAATCAGTTTATTGGAAGTATTCCTCCTGAGCTAGGAAATTTAGTTCGGTTGGAGACTCTGAGGTTATATCACAATAATTTGAATTCCACCATTCCATCTTCCATTTTCCAGTTGAAATCGTTAACACATTTAGGACTCTCAGAGAATATATTGGAGGGAACAATATCTTCTGAGATTGGATCTCTGAGTTCCTTACAGGTTCTAACCCTGCATTCAAATGCTTTTACTGGGAAGATCCCTTCATCAATAACAAACTTGACAAACTTGACATATCTGTCAATGAGCCAGAATCTCCTTTCAGGTGAACTTCCTCCAAACTTGGGTGTGCTTCATAATTTGAAGTTTCTTGTTTTGAACTCCAACAACTTTCATGGATCCATTCCCTCTAGCATTACCAATATTACTAGTCTTGTAAATGTAAGTTTGTCTTTTAATGCTTTAACTGGGAAAATTCCTGAGGGTTTTTCAAGGTCGCCTAATCTTACTTTCCTGTCTCTTACATCCAACAAAATGACTGGGGAAATCCCAGATGACCTCTATAACTGCTCAAATCTTAGCACTCTAAGTTTGGCAATGAACAACTTCAGTGGATTGATAAAATCAGGTATCCAGAACCTGTCTAAACTCATACGCCTGCAGCTGAATGCAAATTCTTTCATAGGACCAATTCCACCAGAGATTGGAAACTTGAATCAACTCGTCACTTTATCCCTTTCAGAAAATAGGTTTTCAGGTCAAATTCCTCCAGAACTGTCCAAACTTTCTCACCTTCAGGGGCTCTCTCTATATGCAAATGTATTAGAAGGTCCAATACCTGATAAGCTCTCTGAATTAAAAGAACTAACTGAACTTATGCTGCATCAAAACAAGTTGGTTGGTCAAATACCCGATTCTCTCTCAAAGCTTGAGATGCTTTCATTCTTAGACCTTCACGGCAACAAACTTGATGGGTCCATTCCAAGAAGCATGGGGAAGCTTAATCAGCTTTTATCATTGGATCTCTCTCACAACCAGCTCACAGGATCAATTCCCAGAGATGTCATTGCACACTTCAAAGACATGCAGATGTATCTTAACCTTTCTTACAACCACTTGGTTGGAAGTGTTCCAACTGAGTTGGGCATGTTGGGAATGATACAAGCTATTGATATTTCAAACAATAATCTTTCAGGTTTCATTCCCAAAACACTTGCTGGATGCAGAAATCTGTTCAATCTTGATTTTTCAGGAAACAATATTTCAGGTCCTATTCCTGCAGAAGCTTTTAGTCACATGGACTTGCTTGAAAACTTAAACCTCTCAAGAAATCATCTAGAAGGTGAAATCCCTGAAATATTAGCAGAACTTGATCATCTTAGTTCCCTAGATCTTTCTCAGAATGACTTGAAGGGAACTATTCCTGAGCGCTTTGCCAACCTTTCCAACTTGGTGCATCTCAACCTTTCCTTCAATCAACTTGAAGGTCCTGTACCCAATTCCGGAATTTTTGCACACATCAATGCATCTAGTATGGTAGGAAACCAGGATCTTTGTGGAGCTAAGTTCCTATCACAATGCAGAGAGACAAAACATTCACTATCCAAGAAGAGCATATCTATTATTGCTTCACTTGGATCACTTGCTATACTGCTATTACTAGTGTTGGTGATTCTAATTCTCAATAGAGGTATCAAACTCTGCAATTCTAAAGAAAGGGATATTAGTGCGAATCATGGACCAGAATACAGTTCAGCATTGCCACTTAAAAGGTTCAATCCAAAGGAGTTGGAGATTGCCACTGGTTTTTTCAGTGCAGACAGCATCATTGGTTCTAGCAGTTTGAGCACAGTTTACAAAGGTCAAATGGAAGATGGCCAGGTTGTAGCCATAAAAAGATTGAATCTGCAACAATTCTCTGCAAATACTGACAAGATCTTCAAGAGAGAAGCCAACACCTTGAGCCAGATGAGACATAGGAATTTGGTCAAGGTACTTGGATATGCCTGGGAGAGTGGGAAAATGAAGGCTTTGGTTCTAGAGTACATGGAGAATGGGAATTTGGATAGCATCATACACGGCAAAGGGGTAGATCAGTCTGTGACCTCTAGGTGGACATTATCTGAAAGAGTCCGAGTTTTCATTTCTATTGCTAGTGCATTGGATTATTTGCACTCTGGTTATGATTTTCCCATTGTGCACTGTGATTTAAAGCCTTCTAACATTCTTTTAGACAGAGAGTGGGAAGCTCATGTCAGTGACTTTGGGACAGCACGAATACTTGGTCTTCATGAGCAGGCTGGTAGTACCCTTTCCTCATCAGCAGCTTTGCAAGGCACAGTTGGCTATATGGCACCAGAATTTGCCTACATGAGGAAAGTAACAACTGAAGCGGATGTGTTCAGCTTTGGTATCATAGTAATGGAGTTTCTAACAAAAAGAAGGCCGACAGGACTCTCAGAAGAGGATGGTTTGCCAATCACTTTGCATGAAGTGGTGACAAAAGCCCTTGCAAATGGAATAGAACAACTTGTTGATATCGTGGACCCTTTGTTGACTTGGAATGTTACAAAAAATCATGATGAAGTGTTGGCAGAGCTCTTTAAGCTATCCCTGTGCTGCACCCTCCCTGATCCTGAACATCGACCCAATACAAATGAGGTGTTATCTGCCCTTGTGAAGCTTCAAACAACACTGTCTTGTTAA
Predicted protein sequences of Glyma08g08810
>Glyma08g08810.1   sequence type=predicted peptide   gene model=Glyma08g08810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSLKISLTIGIVLSIVSIVSHAETSLDVEIQALKAFKNSITGDPSGALADWVDSHHHCNWSGIACDPSSSHVISISLVSLQLQGEISPFLGNISGLQVLDLTSNSFTGYIPAQLSFCTHLSTLSLFENSLSGPIPPELGNLKSLQYLDLGNNFLNGSLPDSIFNCTSLLGIAFTFNNLTGRIPSNIGNLVNATQILGYGNNLVGSIPLSIGQLVALRALDFSQNKLSGVIPREIGNLTNLEYLLLFQNSLSGKIPSEIAKCSKLLNLEFYENQFIGSIPPELGNLVRLETLRLYHNNLNSTIPSSIFQLKSLTHLGLSENILEGTISSEIGSLSSLQVLTLHSNAFTGKIPSSITNLTNLTYLSMSQNLLSGELPPNLGVLHNLKFLVLNSNNFHGSIPSSITNITSLVNVSLSFNALTGKIPEGFSRSPNLTFLSLTSNKMTGEIPDDLYNCSNLSTLSLAMNNFSGLIKSGIQNLSKLIRLQLNANSFIGPIPPEIGNLNQLVTLSLSENRFSGQIPPELSKLSHLQGLSLYANVLEGPIPDKLSELKELTELMLHQNKLVGQIPDSLSKLEMLSFLDLHGNKLDGSIPRSMGKLNQLLSLDLSHNQLTGSIPRDVIAHFKDMQMYLNLSYNHLVGSVPTELGMLGMIQAIDISNNNLSGFIPKTLAGCRNLFNLDFSGNNISGPIPAEAFSHMDLLENLNLSRNHLEGEIPEILAELDHLSSLDLSQNDLKGTIPERFANLSNLVHLNLSFNQLEGPVPNSGIFAHINASSMVGNQDLCGAKFLSQCRETKHSLSKKSISIIASLGSLAILLLLVLVILILNRGIKLCNSKERDISANHGPEYSSALPLKRFNPKELEIATGFFSADSIIGSSSLSTVYKGQMEDGQVVAIKRLNLQQFSANTDKIFKREANTLSQMRHRNLVKVLGYAWESGKMKALVLEYMENGNLDSIIHGKGVDQSVTSRWTLSERVRVFISIASALDYLHSGYDFPIVHCDLKPSNILLDREWEAHVSDFGTARILGLHEQAGSTLSSSAALQGTVGYMAPEFAYMRKVTTEADVFSFGIIVMEFLTKRRPTGLSEEDGLPITLHEVVTKALANGIEQLVDIVDPLLTWNVTKNHDEVLAELFKLSLCCTLPDPEHRPNTNEVLSALVKLQTTLSC*






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