Glyma08g08750 - SoyBase

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Report for Sequence Feature Glyma08g08750

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6258541
stop:	6260652
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48870	AT	Annotation by Michelle Graham. TAIR10: Small nuclear ribonucleoprotein family protein \| chr5:19813407-19814362 FORWARD LENGTH=88	SoyBase	E_val: 3.00E-49	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005732	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small nucleolar ribonucleoprotein complex	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG1775	KOG	U6 snRNA-associated Sm-like protein	JGI		ISS
PTHR20971	Panther	U6 SNRNA-ASSOCIATED PROTEIN	JGI		ISS
PF01423	PFAM	LSM domain	JGI		ISS
UniRef100_I1KRE2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRE2_SOYBN	SoyBase	E_val: 5.00E-66	ISS
UniRef100_I3NML9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Hevea brasiliensis RepID=I3NML9_HEVBR	SoyBase	E_val: 3.00E-48	ISS

Expression Patterns of Glyma08g08750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08750

Paralog	Evidence	Comments
Glyma05g25800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g082700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g08750

Limit To All Plant Sequences

>Glyma08g08750.2   sequence type=transcript   gene model=Glyma08g08750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTAAAAGTGAATGATCTTTTATTGGCAAATTTTGAAATGAAAATTGTGGGGGACTCAAATTGATTGAAATCAAACCTCACCACCGCTGCTAGGTCAAGCTTCTCTGTCGGTCATTGCATCTCCAATCTCGCTTCTTCTCTCAGATTCAGATACCAATTCGGTTTCTTCCGAACCAAACTTGTTTTTGAGAAATTCGGCAATTGATTTTCCATGGCCAACAATCCGTCACAGCTTCTCCCATCAGAGTTGATTGACCGGTGTATAGGTTCGAAAATTTGGGTGATAATGAAGGGTGACAAGGAGCTTGTTGGTACTCTTAGAGGCTTTGATGTTTATGTCAACATGGTCCTTGAAGATGTTACTGAATATGAGATCACTGCTGAAGGGAGACGGATAACCAAGCTTGATCAGATTTTACTCAATGGAAACAACATTGCCATTTTGGTCCCTGGTGGTTCTCCTGAGTCAGAATGAACAGTGCTACTTGGTTACCAATATTAACTCACCAATGTTGCTCTAGGCACGTAATTCCTATATTTTAACGAGGATTCTGAGACCACTAGGTTTTTACTTTCTTATGTTTGTTTTTATGATATGGTTGTAGTGTAATGCTTATTCAACTTTTACCATCATGTTGAACTGTGGATTGTCCAGTGTAACAAGTAATGCTACTAATTATGGCAATTAATTTTGTGCGCCTTTATATACTTGTTCTTACCTGTTCTTACCTCCGTTTCTATCAGCTTTCACTCTGTATGAACTGATTGAGTCAATTATACACAGCCAGCTATCTTTTTCGTGCTGTAAACAGGTT

Coding sequences of Glyma08g08750

Limit To All Plant Sequences

>Glyma08g08750.1   sequence type=CDS   gene model=Glyma08g08750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAACAATCCGTCACAGCTTCTCCCATCAGAGTTGATTGACCGGTGTATAGGTTCGAAAATTTGGGTGATAATGAAGGGTGACAAGGAGCTTGTTGGTACTCTTAGAGGCTTTGATGTTTATGTCAACATGGTCCTTGAAGATGTTACTGAATATGAGATCACTGCTGAAGGGAGACGGATAACCAAGCTTGATCAGATTTTACTCAATGGAAACAACATTGCCATTTTGTTCCTCGCAAGTGTTATACTGATACTAGCAATTATCTGGCTTCATGCAGTTGGTCCCTGGTGGTTCTCCTGA

>Glyma08g08750.2   sequence type=CDS   gene model=Glyma08g08750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAACAATCCGTCACAGCTTCTCCCATCAGAGTTGATTGACCGGTGTATAGGTTCGAAAATTTGGGTGATAATGAAGGGTGACAAGGAGCTTGTTGGTACTCTTAGAGGCTTTGATGTTTATGTCAACATGGTCCTTGAAGATGTTACTGAATATGAGATCACTGCTGAAGGGAGACGGATAACCAAGCTTGATCAGATTTTACTCAATGGAAACAACATTGCCATTTTGGTCCCTGGTGGTTCTCCTGAGTCAGAATGA

Predicted protein sequences of Glyma08g08750

Limit To All Plant Sequences

>Glyma08g08750.1   sequence type=predicted peptide   gene model=Glyma08g08750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILFLASVILILAIIWLHAVGPWWFS*

>Glyma08g08750.2   sequence type=predicted peptide   gene model=Glyma08g08750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPESE*

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