Glyma08g08730 - SoyBase

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Report for Sequence Feature Glyma08g08730

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6237104
stop:	6244576
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34410	AT	Annotation by Michelle Graham. TAIR10: O-acetyltransferase family protein \| chr2:14518719-14522053 FORWARD LENGTH=540	SoyBase	E_val: 0	ISS
GO:0009834	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016413	GO-mf	Annotation by Michelle Graham. GO Molecular Function: O-acetyltransferase activity	SoyBase	N/A	ISS
KOG1699	KOG	O-acetyltransferase	JGI		ISS
PTHR13533	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13533:SF1	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07779	PFAM	Cas1p-like protein	JGI		ISS
UniRef100_B9S163	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: O-acetyltransferase, putative n=1 Tax=Ricinus communis RepID=B9S163_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KRE0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRE0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g08730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08730

Paralog	Evidence	Comments
Glyma05g25780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g082500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g08730

Limit To All Plant Sequences

>Glyma08g08730.1   sequence type=CDS   gene model=Glyma08g08730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTTTCGGGGCCGATCACGCCGGGGCAGGTGTCTTTCTTGCTGGGGGTTATTCCAGTTTTTGTTTCATGGATATATTCAGAGTACTTGGAGTACAAGAAACCCTCATCTCCTCCCAAAGTTCATTCAGATGTTTGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGATGATCGGGCCATTTTGCTGGAATCAGGGCTTACAAGATCAGCATCAGCAAAATTCCATCCATCATCTGTCAAATTGAATTTGATTCGGTTTTTGACCATGGATGATTCTTTCTTGTTAGAAAATCGAGCAACTTTGAGGGCAATGGCTGAATTTGGGCTGATTCTGTTTTATTTCTACATATGTGATCGAACCAACATACTTGGAGATTCCACCAAGAGTTATAGTCGGGATCTTTTCATCTTCCTCTACCTTCTTCTGATTATAGTTTCAGCTTTGAGTTCTTTGAAGAAACATAATGACTCATCAACATTTTCTGGAAAAAATATACTTTACCTTAACCGACATCAAACAGAGGAGTGGAAAGGATGGATGCAGGTCCTCTTTTTAATGTATCATTATTTTGCTGCAACGGAGATATACAATGCAATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATATCAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAACAATGACTATATGCTCTACTATATATGCCCAATGCACACGCTTTTCACTTTGATGGTGTATGGAGCATTGGGTATATATAACAAGTATAATGAAGTTCCCTCTGTGATGGCTGCAAAGATTTTGGCATGCTTTCTTGTGGTGATCTTGGTTTGGGAAATCCCTGGATTCTTTGACATATTTTGGAGCCCATTTGCTTTATTTTTGGGTTATACTGATCCTGCAAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATGTTGAGAAATGGATGGAAAAATTGGAAGAGAGTGAGATCAAGAGGAGAGCTACCATCAAAACCAGCATTGTTTCTGTTGCATTATTTGTTGGGTACTTGTGGTATGAATACATATACAAGCTGGATAAGGTCTCATACAACAAGCTCCACCCCTACACCTCATGGATTCCAATTACTGTATACATTTGCTTGAGGAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGCGTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTGGTTAAGGTCTAACATGCCAAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTGTATCTCATCGACTTTTTGAATTAACAAATACACTCAAGACAGTGTTCATACCTACGAAAGACAATCGAAGGCTGCTGCATAATTTTATTACTGGGGTTGTACTTTGCCTTTCTCTGTATTGCATTGCACTTATTCTTCTTCTGATTCCTCATTCAACGGTTTAA

Predicted protein sequences of Glyma08g08730

Limit To All Plant Sequences

>Glyma08g08730.1   sequence type=predicted peptide   gene model=Glyma08g08730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVSGPITPGQVSFLLGVIPVFVSWIYSEYLEYKKPSSPPKVHSDVCLEELGKDAIKEDDRAILLESGLTRSASAKFHPSSVKLNLIRFLTMDDSFLLENRATLRAMAEFGLILFYFYICDRTNILGDSTKSYSRDLFIFLYLLLIIVSALSSLKKHNDSSTFSGKNILYLNRHQTEEWKGWMQVLFLMYHYFAATEIYNAIRVFIAAYVWMTGFGNFSYYYIRKDFSLPRFAQMMWRLNFFVAFCCIVLNNDYMLYYICPMHTLFTLMVYGALGIYNKYNEVPSVMAAKILACFLVVILVWEIPGFFDIFWSPFALFLGYTDPAKPDLPRMHEWHFRSGLDRYIWIIGMIYAYFHPNVEKWMEKLEESEIKRRATIKTSIVSVALFVGYLWYEYIYKLDKVSYNKLHPYTSWIPITVYICLRNFSQRLRNFSLTLFAWLGKITLETYISQFHIWLRSNMPNGQPKWLLSLIPEYPMLNFMLTTAIYVFVSHRLFELTNTLKTVFIPTKDNRRLLHNFITGVVLCLSLYCIALILLLIPHSTV*

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