Glyma08g08720 - SoyBase

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Report for Sequence Feature Glyma08g08720

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6221520
stop:	6224064
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18170	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 28 \| chr4:10061508-10062691 FORWARD LENGTH=318	SoyBase	E_val: 5.00E-73	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_B9S164	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S164_RICCO	SoyBase	E_val: 3.00E-91	ISS
UniRef100_UPI0002339139	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339139 related cluster n=1 Tax=unknown RepID=UPI0002339139	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma08g08720

Locus	Gene Symbol	Protein Name
	WRKY114	WRKY Transcription Factor

Expression Patterns of Glyma08g08720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08720

Paralog	Evidence	Comments
Glyma05g25770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g082400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g08720

Limit To All Plant Sequences

>Glyma08g08720.2   sequence type=CDS   gene model=Glyma08g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGTTGAACCTAAGGAACTTTACTACCAGGACCTTGTCCTAGACCACAATATCATTAATAATCAGCATCAGGGCACAGAAGCAGGATCTAATACTACTATGTACGAAAAGCACTTTTCCTCTACCTTAATTCCTTCAGTTTCAGCAGCATATGATTCATCACAAGCCTTTGATCCCTCTTACATGAGTTTCACTGACTGTTTGCAAGGAAGCATGGACTACAACTCACTTGCAACTTCTTTTGGCCTTTCTCCTTCCTCATCTGAGGTTTTTTCTTCTGTTGAAGGGAACCAAAAGCCAGCAGAAGGAGGAGGAGATGGTGGTGGTGGTGGTGGTGGTAGTGGTGGCAGTGAAACCCTTGCGACCCTTAACTCTTCTATCTCTTCTTCATCTTCTGAAGCCGGGGCTGAGGAAGATTCAGGAAAGAGCAAAAAAGAAAGGCAAGTGAAAACTGAAGAAGGAGGAGAAAACTCTAAGAAAGGGAACAAGGAGAAGAAGAAAGGAGAGAAGAAGCAAAAGGAGCCAAGGTTTGCCTTCATGACCAAGAGTGAGGTTGATCACCTTGAAGATGGATACAGATGGAGAAAATATGGACAAAAAGCTGTCAAGAATAGCCCTTACCCAAGGAGCTACTACAGGTGCACTACACAGAAGTGCACAGTGAAGAAACGCGTGGAGAGGTCATTTCAGGACCCAACCACTGTGATAACAACGTATGAAGGTCAACACAACCATCCGGTCCCCACTTCTCTCAGAGGGAATGCGGCCGCAGGAATGTTCACACCCTCTTCTTTGCTAGCCACACCAACTCATCCACTCGCAGCCGGGTCAAACTTCCCGCAAGATCTCTTCCTTCACATGCATTACCCTCGTCACCACCACCAATATCATCACATTCACAACAACCTCTTCGCCACACAATCCATGACAAATGCTACTACTGCTACTACTACAACCACCACTGCTACCATCGCTCCGTCCTCGTTTTACTCTTCCTATAACAACATTAACAACTCTCTTCTTAACAACCAGTTTCTTCCTCCAGAATACGGCCTCCTTCAAGACATAGTCCCTTCCATGTTACACAACAAGTCCCATCATAACCAGAATTAA

Predicted protein sequences of Glyma08g08720

Limit To All Plant Sequences

>Glyma08g08720.2   sequence type=predicted peptide   gene model=Glyma08g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVEPKELYYQDLVLDHNIINNQHQGTEAGSNTTMYEKHFSSTLIPSVSAAYDSSQAFDPSYMSFTDCLQGSMDYNSLATSFGLSPSSSEVFSSVEGNQKPAEGGGDGGGGGGGSGGSETLATLNSSISSSSSEAGAEEDSGKSKKERQVKTEEGGENSKKGNKEKKKGEKKQKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPTTVITTYEGQHNHPVPTSLRGNAAAGMFTPSSLLATPTHPLAAGSNFPQDLFLHMHYPRHHHQYHHIHNNLFATQSMTNATTATTTTTTATIAPSSFYSSYNNINNSLLNNQFLPPEYGLLQDIVPSMLHNKSHHNQN*

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