Glyma08g08710 - SoyBase

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Report for Sequence Feature Glyma08g08710

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6194991
stop:	6203144
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18160	AT	Annotation by Michelle Graham. TAIR10: Ca2+ activated outward rectifying K+ channel 6 \| chr4:10055696-10057546 FORWARD LENGTH=436	SoyBase	E_val: 9.00E-177	ISS
GO:0071805	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transmembrane transport	SoyBase	N/A	ISS
GO:0009705	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005267	GO-mf	Annotation by Michelle Graham. GO Molecular Function: potassium channel activity	SoyBase	N/A	ISS
GO:0015271	GO-mf	Annotation by Michelle Graham. GO Molecular Function: outward rectifier potassium channel activity	SoyBase	N/A	ISS
KOG1418	KOG	Tandem pore domain K+ channel	JGI		ISS
PTHR11003	Panther	POTASSIUM CHANNEL, SUBFAMILY K	JGI		ISS
PTHR11003:SF5	Panther	POTASSIUM CHANNEL PROTEIN	JGI		ISS
PF07885	PFAM	Ion channel	JGI		ISS
UniRef100_B9S165	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-activated outward-rectifying potassium channel, putative n=1 Tax=Ricinus communis RepID=B9S165_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KRD8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KRD8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g08710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08710

Paralog	Evidence	Comments
Glyma05g25750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g082200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g08710

Limit To All Plant Sequences

>Glyma08g08710.2   sequence type=transcript   gene model=Glyma08g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTCTCTTCAATCACTATGAATAATAAAACACTTGGCTATCATTTTTTTTGTGAATCATAATTACTTCAATCATGTCCGATTGATTGTAAAAGAAGACACACATGAAAACTTAAAAGAAAAAAAAGTTGGGGCACTTGCCCGAAGAAGCGCGTGTCCTCATTCCCGAACCCATTGTCATGTAATCTCTGTGTCTCTCTCTTTTCTCTATCTGTTATAACTTCCACCCTCACTTTGCTCTCTTAACACAAATCACTCTCTCTGCATTTCCACAACCAATTTCCCTCCATTCCGAAACCGACCCATCTCCTCAAAACTGTTCCATCTTCCAAAGCCATCGCCTTTGCCTCCGTGGAACCATTTTTCTTTCTCTGAATCCCCAAACTCGGGTACCCTTATGGAAAAGGAGCCTCTGCTCCCATATTTCAGCCCCAGAAAGAAGCCTCAACCATTTCCACCACTATGCCCCTTACCAGAACACGACGAAATCGTTCTTCCTATGACCCCTTCGGAATTCAAGGACCGTCTCATCTTTGGTCCTTCTCCTTCCTCTGCTTCCCCAAGAGACCCTTCACCTCTGGCTGATGCCTTAACACTCTCTTACAATTCCCCAAAATGCCCCTCCTCTTCAAACTCACAGGACTATGCATCACCGCCACTATTTGATTCCCAACAACAGCAACCGCTCAACTCTTGGCTCCTTGACCCCAATTACGAGTCATGGCGGAAAACGAACCTTCACCGATCGAAAACCGCGCCGGCCATGGCCGTGATCAGCGATTTCAACCCCCACACCGCCGTGCAAAGACCCCAGTTTGCCAGCCAGAGTATTGTCCGCCAGGGTGTTATTCTTCTTGCTCTTTATTTGGCATTAGGGGTTGTCATTTATTGGTTCAATCGTCATAATTTTACAGCCACCGAGACTCATCCTGTAGTTGATGCATTGTATTTTTGTATAGTGACAATGTGCACAATAGGGTATGGTGACATCACTCCCAATAGTACAGCCACTAAGCTTTTCTCTATATTGTTTGTGTTGGTGGGGTTTGGATTTATAGACATATTGTTGAGTGGGATGGTTAGCTATGTGCTTGATTTGCAGGAGAATCATATGTTGACGGCGGTGAAGGGGAGGAGGGGTGAGAAGGATGGAAAGTCTTATATAATTGATGTGAAGAAAGGGAGGATGAGGATTCGGTTGAAGGTGGCGCTGGCTTTGGGGGTTGTGGTGATTTGTACTGGGGTAGGTGTGGGGGTTATGCATTTTGTGGAGAAGCTTGGATGGTTGGATTCGTTTTATCTTTCGGTTATGTCGGTTACCACGGTTGGGTATGGAGACCACGCGTTCAAGACCATGCACGGTCGGATCTTTGCTGCGATTTGGTTGCTTGTGTCGACGCTTGCTGTGGCCCGGGCGTTTCTCTATCTGGCTGAGGCCAGAGTGGATAAGCGTCATAGGAGGATGGCAAAGTGGATTCTTGGTCAGGATATGACTGTTTCTGAGTTTCTAGCAGCAGACATTGACAATAATGGCTTTGTGAGGAGTAGTCTCCACTTGGGTATTGGCGGCCAGGATCTGACCATAAGTAAATCAGAATATGTTATATACAAGCTCAAGGAGATGGGAAAAGTATCTGAGAAGGACATCATGCAGGTTAGTGAGAAGTTTGATAGACTAGATGCTGGCAACTGCGGAAAAATAACGCTTGCTGATCTTATGGAGAATCATAATTGATGAGCTCAGTGTTTCCAATTAGAGAAGAGAGTGTCAGATTCTCAAGTTGATGGGAACTTTCTTCTTTTGGGGATTGGTAGGGATATCAGATTGTCAAAATGGCAAGCTGGTAATTTTCCCCTTACCCTCTTGTCATGATCATTAACTCATGACATAAAGTGAATGCTGGTGAATTTCTGGGTTCTTTTTCCTGAATTTCACAAATTATTTGGAGGATGCTAAGAATGCAAGGCACCTTGCTGAAATTCGGGTATAACCAACCAAATCACAAATTGTCAGATTGATGAGATGGCTTGTGATAATGGAGGGGATAATTTTGATTGGTTAAATAATTAATTTGTACATATTTTTTTTTTTTGAAAATGAATTGCATTGATTCTTTAGCATATTATTTCTAGTGAGCTTCTCTGGGTTAGCTCAGGCGTAATAAAATGTTTCTTATTTAAGTTCTTTCACAATTCAATTCTTGGTTGAGTAAAGATATAGCACATGCTTATATTCACGTATGGCATTGGACAATACTCTCCAGTTGTAGACTTGTTTCTAAGATGTTTCAGATTGTGCAGTGTGAATTGTGAACT

Coding sequences of Glyma08g08710

Limit To All Plant Sequences

>Glyma08g08710.1   sequence type=CDS   gene model=Glyma08g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGGAGCCTCTGCTCCCATATTTCAGCCCCAGAAAGAAGCCTCAACCATTTCCACCACTATGCCCCTTACCAGAACACGACGAAATCGTTCTTCCTATGACCCCTTCGGAATTCAAGGACCGTCTCATCTTTGGTCCTTCTCCTTCCTCTGCTTCCCCAAGAGACCCTTCACCTCTGGCTGATGCCTTAACACTCTCTTACAATTCCCCAAAATGCCCCTCCTCTTCAAACTCACAGGACTATGCATCACCGCCACTATTTGATTCCCAACAACAGCAACCGCTCAACTCTTGGCTCCTTGACCCCAATTACGAGTCATGGCGGAAAACGAACCTTCACCGATCGAAAACCGCGCCGGCCATGGCCGTGATCAGCGATTTCAACCCCCACACCGCCGTGCAAAGACCCCAGTTTGCCAGCCAGAGTATTGTCCGCCAGGGTGTTATTCTTCTTGCTCTTTATTTGGCATTAGGGGTTGTCATTTATTGGTTCAATCGTCATAATTTTACAGCCACCGAGACTCATCCTGTAGTTGATGCATTGTATTTTTGTATAGTGACAATGTGCACAATAGGGTATGGTGACATCACTCCCAATAGTACAGCCACTAAGCTTTTCTCTATATTGTTTGTGTTGGTGGGGTTTGGATTTATAGACATATTGTTGAGTGGGATGGTTAGCTATGTGCTTGATTTGCAGGAGAATCATATGTTGACGGCGGTGAAGGGGAGGAGGGGTGAGAAGGATGGAAAGTCTTATATAATTGATGTGAAGAAAGGGAGGATGAGGATTCGGTTGAAGGTGGCGCTGGCTTTGGGGGTTGTGGTGATTTGTACTGGGGTAGGTGTGGGGGTTATGCATTTTGTGGAGAAGCTTGGATGGTTGGATTCGTTTTATCTTTCGGTTATGTCGGTTACCACGGTTGGGTATGGAGACCACGCGTTCAAGACCATGCACGGTCGGATCTTTGCTGCGATTTGGTTGCTTGTGTCGACGCTTGCTGTGGCCCGGGCGTTTCTCTATCTGGCTGAGGCCAGAGTGGATAAGCGTCATAGGAGGATGGCAAAGTGGATTCTTGGTCAGGATATGACTGTTTCTGAGTTTCTAGCAGCAGACATTGACAATAATGGCTTTGTGAGTAAATCAGAATATGTTATATACAAGCTCAAGGAGATGGGAAAAGTATCTGAGAAGGACATCATGCAGGTTAGTGAGAAGTTTGATAGACTAGATGCTGGCAACTGCGGAAAAATAACGCTTGCTGATCTTATGGAGAATCATAATTGA

>Glyma08g08710.2   sequence type=CDS   gene model=Glyma08g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGGAGCCTCTGCTCCCATATTTCAGCCCCAGAAAGAAGCCTCAACCATTTCCACCACTATGCCCCTTACCAGAACACGACGAAATCGTTCTTCCTATGACCCCTTCGGAATTCAAGGACCGTCTCATCTTTGGTCCTTCTCCTTCCTCTGCTTCCCCAAGAGACCCTTCACCTCTGGCTGATGCCTTAACACTCTCTTACAATTCCCCAAAATGCCCCTCCTCTTCAAACTCACAGGACTATGCATCACCGCCACTATTTGATTCCCAACAACAGCAACCGCTCAACTCTTGGCTCCTTGACCCCAATTACGAGTCATGGCGGAAAACGAACCTTCACCGATCGAAAACCGCGCCGGCCATGGCCGTGATCAGCGATTTCAACCCCCACACCGCCGTGCAAAGACCCCAGTTTGCCAGCCAGAGTATTGTCCGCCAGGGTGTTATTCTTCTTGCTCTTTATTTGGCATTAGGGGTTGTCATTTATTGGTTCAATCGTCATAATTTTACAGCCACCGAGACTCATCCTGTAGTTGATGCATTGTATTTTTGTATAGTGACAATGTGCACAATAGGGTATGGTGACATCACTCCCAATAGTACAGCCACTAAGCTTTTCTCTATATTGTTTGTGTTGGTGGGGTTTGGATTTATAGACATATTGTTGAGTGGGATGGTTAGCTATGTGCTTGATTTGCAGGAGAATCATATGTTGACGGCGGTGAAGGGGAGGAGGGGTGAGAAGGATGGAAAGTCTTATATAATTGATGTGAAGAAAGGGAGGATGAGGATTCGGTTGAAGGTGGCGCTGGCTTTGGGGGTTGTGGTGATTTGTACTGGGGTAGGTGTGGGGGTTATGCATTTTGTGGAGAAGCTTGGATGGTTGGATTCGTTTTATCTTTCGGTTATGTCGGTTACCACGGTTGGGTATGGAGACCACGCGTTCAAGACCATGCACGGTCGGATCTTTGCTGCGATTTGGTTGCTTGTGTCGACGCTTGCTGTGGCCCGGGCGTTTCTCTATCTGGCTGAGGCCAGAGTGGATAAGCGTCATAGGAGGATGGCAAAGTGGATTCTTGGTCAGGATATGACTGTTTCTGAGTTTCTAGCAGCAGACATTGACAATAATGGCTTTGTGAGGAGTAGTCTCCACTTGGGTATTGGCGGCCAGGATCTGACCATAAGTAAATCAGAATATGTTATATACAAGCTCAAGGAGATGGGAAAAGTATCTGAGAAGGACATCATGCAGGTTAGTGAGAAGTTTGATAGACTAGATGCTGGCAACTGCGGAAAAATAACGCTTGCTGATCTTATGGAGAATCATAATTGA

Predicted protein sequences of Glyma08g08710

Limit To All Plant Sequences

>Glyma08g08710.1   sequence type=predicted peptide   gene model=Glyma08g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKEPLLPYFSPRKKPQPFPPLCPLPEHDEIVLPMTPSEFKDRLIFGPSPSSASPRDPSPLADALTLSYNSPKCPSSSNSQDYASPPLFDSQQQQPLNSWLLDPNYESWRKTNLHRSKTAPAMAVISDFNPHTAVQRPQFASQSIVRQGVILLALYLALGVVIYWFNRHNFTATETHPVVDALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGFIDILLSGMVSYVLDLQENHMLTAVKGRRGEKDGKSYIIDVKKGRMRIRLKVALALGVVVICTGVGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDHAFKTMHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRRMAKWILGQDMTVSEFLAADIDNNGFVSKSEYVIYKLKEMGKVSEKDIMQVSEKFDRLDAGNCGKITLADLMENHN*

>Glyma08g08710.2   sequence type=predicted peptide   gene model=Glyma08g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKEPLLPYFSPRKKPQPFPPLCPLPEHDEIVLPMTPSEFKDRLIFGPSPSSASPRDPSPLADALTLSYNSPKCPSSSNSQDYASPPLFDSQQQQPLNSWLLDPNYESWRKTNLHRSKTAPAMAVISDFNPHTAVQRPQFASQSIVRQGVILLALYLALGVVIYWFNRHNFTATETHPVVDALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGFIDILLSGMVSYVLDLQENHMLTAVKGRRGEKDGKSYIIDVKKGRMRIRLKVALALGVVVICTGVGVGVMHFVEKLGWLDSFYLSVMSVTTVGYGDHAFKTMHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRRMAKWILGQDMTVSEFLAADIDNNGFVRSSLHLGIGGQDLTISKSEYVIYKLKEMGKVSEKDIMQVSEKFDRLDAGNCGKITLADLMENHN*

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