Glyma08g08700 - SoyBase

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Report for Sequence Feature Glyma08g08700

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6188257
stop:	6191546
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29850	AT	Annotation by Michelle Graham. TAIR10: double-stranded DNA-binding family protein \| chr1:10447866-10449630 FORWARD LENGTH=129	SoyBase	E_val: 8.00E-68	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003690	GO-mf	Annotation by Michelle Graham. GO Molecular Function: double-stranded DNA binding	SoyBase	N/A	ISS
KOG3431	KOG	Apoptosis-related protein/predicted DNA-binding protein	JGI		ISS
PTHR10840	Panther	PROGRAMMED CELL DEATH 5	JGI		ISS
PF01984	PFAM	Double-stranded DNA-binding domain	JGI		ISS
UniRef100_B4UW59	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Double-stranded DNA-binding protein n=1 Tax=Arachis hypogaea RepID=B4UW59_ARAHY	SoyBase	E_val: 8.00E-76	ISS
UniRef100_I1KRD5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRD5_SOYBN	SoyBase	E_val: 3.00E-84	ISS

Expression Patterns of Glyma08g08700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08700

Paralog	Evidence	Comments
Glyma05g25740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g082100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g08700

Limit To All Plant Sequences

>Glyma08g08700.2   sequence type=transcript   gene model=Glyma08g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAGTATTGGTTTAATACCGTGGAGTGTTGGTGGAAATAATAGAACCAACATCCCCAAACAATCGCTTATTGCTAACGCGACCTCTTCCTGTTCCCGCTGCATCAGCCTCAGAGCACCCGCTAGGGTTTCTTCTGCACACCCAACCAAATGGCGGATCCTGAGTTGGAAGCAATCAGACAGAGAAGGTTGCAGGAGCTTATGGCTAGCCATGGTGGCGTGGGAAATCAACAGAACCCTGAACAGGAGAAAGCTCAGGATGATGCAAAGAGGGAGGCTGAGGAACGGAGACAGATGATGCTTAGTCAGATATTGTCTGCTGAAGCGCGAGAAAGGCTTGCTCGAATTGCTTTGGTGAAACCTGAGAAAGCAAGGGGCGTTGAAGATTTTATATTGAGAGCTGCTCAGATGGGTCAGATAACTGAAAAGGTTTCTGAGGAAAGACTCATATCACTGTTGGAGCAGATAAACAACCAAACAACAAGGCAGACAAAAGTTACAAGGCGTCGAAGTGTTCTTGAGGATGATGATTAACTTTCACTGTCTCTTTAAACGGTGTGCCTTGAGTATTGATTTCATGCTTTATTATATATTTTACTAAGTATTGTATAAGTGGATTGAGAAATATATCTGTTTCAGATTGAAATTTTGGTTGCCTTGCCAGGCCTCCTAATTAAAATACTTGAAAGCTTTTTATTATCATTTTGACACATTCATTTGCAAAACAATTTCTAGCATGTGGATGGCATCTCACAGATTGCATGTTGTTATGTTCCACGAAATAATTTTTTATTTTTTTTTTGGTTTTATTTTCCTTTCACAAGACACCCTTAGTGCTGCATTCAACGAGACATGGTGGAAGATCCTTGTGATTGTTTTAAGGCTCAAGTTGGTTTGAATTGAT

>Glyma08g08700.3   sequence type=transcript   gene model=Glyma08g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAGTATTGGTTTAATACCGTGGAGTGTTGGTGGAAATAATAGAACCAACATCCCCAAACAATCGCTTATTGCTAACGCGACCTCTTCCTGTTCCCGCTGCATCAGCCTCAGAGCACCCGCTAGGGTTTCTTCTGCACACCCAACCAAATGGCGGATCCTGAGTTGGAAGCAATCAGACAGAGAAGGTTGCAGGAGCTTATGGCTAGCCATGGTGGCGGAAATCAACAGAACCCTGAACAGGAGAAAGCTCAGGATGATGCAAAGAGGGAGGCTGAGGAACGGAGACAGATGATGCTTAGTCAGATATTGTCTGCTGAAGCGCGAGAAAGGCTTGCTCGAATTGCTTTGGTGAAACCTGAGAAAGCAAGGGGCGTTGAAGATTTTATATTGAGAGCTGCTCAGATGGGTCAGATAACTGAAAAGGTTTCTGAGGAAAGACTCATATCACTGTTGGAGCAGATAAACAACCAAACAACAAGGCAGACAAAAGTTACAATACAGAGGCGTCGAAGTGTTCTTGAGGATGATGATTAACTTTCACTGTCTCTTTAAACGGTGTGCCTTGAGTATTGATTTCATGCTTTATTATATATTTTACTAAGTATTGTATAAGTGGATTGAGAAATATATCTGTTTCAGATTGAAATTTTGGTTGCCTTGCCAGGCCTCCTAATTAAAATACTTGAAAGCTTTTTATTATCATTTTGACACATTCATTTGCAAAACAATTTCTAGCATGTGGATGGCATCTCACAGATTGCATGTTGTTATGTTCCACGAAATAATTTTTTATTTTTTTTTTGGTTTTATTTTCCTTTCACAAGACACCCTTAGTGCTGCATTCAACGAGACATGGTGGAAGATCCTTGTGATTGTTTTAAGGCTCAAGTTGGTTTGAATTGAT

Coding sequences of Glyma08g08700

Limit To All Plant Sequences

>Glyma08g08700.1   sequence type=CDS   gene model=Glyma08g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATCCTGAGTTGGAAGCAATCAGACAGAGAAGGTTGCAGGAGCTTATGGCTAGCCATGGTGGCGTGGGAAATCAACAGAACCCTGAACAGGAGAAAGCTCAGGATGATGCAAAGAGGGAGGCTGAGGAACGGAGACAGATGATGCTTAGTCAGATATTGTCTGCTGAAGCGCGAGAAAGGCTTGCTCGAATTGCTTTGGTGAAACCTGAGAAAGCAAGGGGCGTTGAAGATTTTATATTGAGAGCTGCTCAGATGGGTCAGATAACTGAAAAGGTTTCTGAGGAAAGACTCATATCACTGTTGGAGCAGATAAACAACCAAACAACAAGGCAGACAAAAGTTACAATACAGAGGCGTCGAAGTGTTCTTGAGGATGATGATTAA

>Glyma08g08700.2   sequence type=CDS   gene model=Glyma08g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATCCTGAGTTGGAAGCAATCAGACAGAGAAGGTTGCAGGAGCTTATGGCTAGCCATGGTGGCGTGGGAAATCAACAGAACCCTGAACAGGAGAAAGCTCAGGATGATGCAAAGAGGGAGGCTGAGGAACGGAGACAGATGATGCTTAGTCAGATATTGTCTGCTGAAGCGCGAGAAAGGCTTGCTCGAATTGCTTTGGTGAAACCTGAGAAAGCAAGGGGCGTTGAAGATTTTATATTGAGAGCTGCTCAGATGGGTCAGATAACTGAAAAGGTTTCTGAGGAAAGACTCATATCACTGTTGGAGCAGATAAACAACCAAACAACAAGGCAGACAAAAGTTACAAGGCGTCGAAGTGTTCTTGAGGATGATGATTAA

>Glyma08g08700.3   sequence type=CDS   gene model=Glyma08g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATCCTGAGTTGGAAGCAATCAGACAGAGAAGGTTGCAGGAGCTTATGGCTAGCCATGGTGGCGGAAATCAACAGAACCCTGAACAGGAGAAAGCTCAGGATGATGCAAAGAGGGAGGCTGAGGAACGGAGACAGATGATGCTTAGTCAGATATTGTCTGCTGAAGCGCGAGAAAGGCTTGCTCGAATTGCTTTGGTGAAACCTGAGAAAGCAAGGGGCGTTGAAGATTTTATATTGAGAGCTGCTCAGATGGGTCAGATAACTGAAAAGGTTTCTGAGGAAAGACTCATATCACTGTTGGAGCAGATAAACAACCAAACAACAAGGCAGACAAAAGTTACAATACAGAGGCGTCGAAGTGTTCTTGAGGATGATGATTAA

Predicted protein sequences of Glyma08g08700

Limit To All Plant Sequences

>Glyma08g08700.1   sequence type=predicted peptide   gene model=Glyma08g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADPELEAIRQRRLQELMASHGGVGNQQNPEQEKAQDDAKREAEERRQMMLSQILSAEARERLARIALVKPEKARGVEDFILRAAQMGQITEKVSEERLISLLEQINNQTTRQTKVTIQRRRSVLEDDD*

>Glyma08g08700.2   sequence type=predicted peptide   gene model=Glyma08g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADPELEAIRQRRLQELMASHGGVGNQQNPEQEKAQDDAKREAEERRQMMLSQILSAEARERLARIALVKPEKARGVEDFILRAAQMGQITEKVSEERLISLLEQINNQTTRQTKVTRRRSVLEDDD*

>Glyma08g08700.3   sequence type=predicted peptide   gene model=Glyma08g08700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADPELEAIRQRRLQELMASHGGGNQQNPEQEKAQDDAKREAEERRQMMLSQILSAEARERLARIALVKPEKARGVEDFILRAAQMGQITEKVSEERLISLLEQINNQTTRQTKVTIQRRRSVLEDDD*

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