Report for Sequence Feature Glyma08g08680
Feature Type: gene_model
Chromosome: Gm08
Start: 6174321
stop: 6177835
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g08680
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G29790 AT
Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:10430025-10431161 FORWARD LENGTH=378
SoyBase E_val: 1.00E-136 ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0008168 GO-mf
Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity
SoyBase N/A ISS
PTHR10108 Panther
METHYLTRANSFERASE
JGI ISS
PTHR10108:SF434 Panther
JGI ISS
PF03141 PFAM
Putative methyltransferase
JGI ISS
UniRef100_I1KRD3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KRD3_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q336N1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=3 Tax=Oryza sativa Japonica Group RepID=Q336N1_ORYSJ
SoyBase E_val: 2.00E-84 ISS
Expression Patterns of Glyma08g08680
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g08680
Paralog Evidence Comments
Glyma05g25720 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g08680 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g081900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g08680
Coding sequences of Glyma08g08680
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g08680.1 sequence type=CDS gene model=Glyma08g08680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACTTACACACCTTTCTCTCTCTGCCCCTCCGATTCCGACCTCGCCGAATCCCTAATCCTCCGCGGCTGCCACCCCCTCCCCCGCCGCCGCTGCTTCTCCAAAACACCACAGAAACAAATTCCCCCAAATTCCCTCCCTAAAAACCCCTTCCCTTCCTCCCTCCCTGACAACGCTGTAATTTGGGATCATTACCAATGCAAATCGTTCGATTGCTTGAATAAACAAAACCCTAACCTCGGCTTCCAACCTTCTCGTGATATTTCGAGGTTCAATTCGTATAAGACTGATTTGGATCTCCCGATCCAGCAGCTGTTTCAGATCGCGGCGGCCGCGAAGTCGGTGCTGCGCCTCGGCCTCGACGTCGGCGGCGGCACCGGCTCCTTCGCCGCAGCGATGAGGCTCCGCAACGTGACCGTGGTAACCACGACCATGAACGTGGTGGCGCCGAACAGCGAGGCCGTCGCGCTGCGGGGGCTCGTGCCGCTGCACATGCCACTGCAGCAGCGGCTTCCGCTGTTCGACGGCGTCCTGGATCTAGTGCGGTGCGGGCGCGCCGTGAACCGGTGGATTCCGTTGACGGTGATGGAGTTTCTGCTGCTGGATGTTGATAGGGTGCTGAGGGGAGGAGGGTACCTTTGGGTGGATCATTTTTTCAGCAAAGGGGTGGACCTTGAGAAGGTGTATGCGCCTTTGATCGGGAAATTGGGGTACAAGAAGGTGAAGTGGGCGACGGGGAATAAGACCGATGCCGGTGGGGTAAAAAATGGGGAAGTTTACTTGACTGCGTTGCTGCAGAAGCCTGTGTCCAGATGA
Predicted protein sequences of Glyma08g08680
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g08680.1 sequence type=predicted peptide gene model=Glyma08g08680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTYTPFSLCPSDSDLAESLILRGCHPLPRRRCFSKTPQKQIPPNSLPKNPFPSSLPDNAVIWDHYQCKSFDCLNKQNPNLGFQPSRDISRFNSYKTDLDLPIQQLFQIAAAAKSVLRLGLDVGGGTGSFAAAMRLRNVTVVTTTMNVVAPNSEAVALRGLVPLHMPLQQRLPLFDGVLDLVRCGRAVNRWIPLTVMEFLLLDVDRVLRGGGYLWVDHFFSKGVDLEKVYAPLIGKLGYKKVKWATGNKTDAGGVKNGEVYLTALLQKPVSR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
