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Report for Sequence Feature Glyma08g08670

Feature Type:gene_model
Chromosome:Gm08
Start:6170844
stop:6172351
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g08670
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61820AT Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24834505-24836223 REVERSE LENGTH=475 SoyBaseE_val: 5.00E-122ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009610GO-bp Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0046482GO-bp Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF07712PFAM Stress up-regulated Nod 19 JGI ISS
UniRef100_I1KRD2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KRD2_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q64EX4UniRef Annotation by Michelle Graham. Most informative UniRef hit: MtN19-like protein n=1 Tax=Pisum sativum RepID=Q64EX4_PEA SoyBaseE_val: 1.00E-164ISS

Expression Patterns of Glyma08g08670
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g08670 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g081800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g08670
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g08670
>Glyma08g08670.1   sequence type=CDS   gene model=Glyma08g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGAAAAGTAATGTGAAATCAGCTGTTTTTCTGTCTCCCAAGATTGAACTTGGACCGGGATCTGTTTCCAATAAAATTTATTATGGTGTTGATTTTCCAAGAGGTCATATTGCAGTGAAGAGTTTTAATGCAGAAGTAGTTGATGAAGCAGGGAACCCTGTGCCTCTCCATGAAACTTATACCACTGGGACACTTAACCACTCTGATTTTATTTTGGTGAGGAACAGTGGTACATGCCAGAGAGATATTCTTGCACAATACTACGGCCTTGGATCCGAAACACGGCGAACAGCTACGGATATTCCAGACCCTTTTGAAATAATTGTTGGTAATCCTGCAAAAATTCCAGAGGGGTACGAGGAGAAATGGTTGGTCAATATCCATGCCATTGATACACGCGGTGTAGTGGATAAAATGGGGTGCACTGAGTGTAAGTGTGAGCTTTATAATGTTACAAATGATGAATATGGAGAGCTTCTTCTAAGGCCAGACTATAAAGGAGGTTTGCTATGTTGCTATGATCAAACCCAGTGCAGGTTGAGGGAAGGCTTTGTGGGCCAAAAGAGGAACCTCTACCTTAGATGCACAGTAAAGTGGGTTAATTGGGACAAGTTCATTGTGCCTGTTAAGATTTATATACTTGATGTCACTGATACTTCAAAAATATCACATGATTCTAAAGGAATGATCGCTGAGCATGATTGCCAGATTGAATATGAGGTTGAATCTTGCAGCACTGGCAATGAGGATGGTAATGACTGTCTCCATGTGAAGAGGACAAACCTCTCAATGAAAAATTGTGGTTATGTCATATATGGTGTTGCTCATCAGCATTCAGGTGGGACTGGATCAATGCTATATGGACAGCTGATGTTCAATGATCGAAGGGTTATATGTTCTTCAATACCAAGTTATGGAAAGGGAAAGGATGAGACAAACTACATTTTAGGAATGTCCACATGTTATCCTCGACCAGGTTCTGTAAAGATCATTGATGGTGAAACTTTAACTCTAGAATCTAATTAA
Predicted protein sequences of Glyma08g08670
>Glyma08g08670.1   sequence type=predicted peptide   gene model=Glyma08g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LKSNVKSAVFLSPKIELGPGSVSNKIYYGVDFPRGHIAVKSFNAEVVDEAGNPVPLHETYTTGTLNHSDFILVRNSGTCQRDILAQYYGLGSETRRTATDIPDPFEIIVGNPAKIPEGYEEKWLVNIHAIDTRGVVDKMGCTECKCELYNVTNDEYGELLLRPDYKGGLLCCYDQTQCRLREGFVGQKRNLYLRCTVKWVNWDKFIVPVKIYILDVTDTSKISHDSKGMIAEHDCQIEYEVESCSTGNEDGNDCLHVKRTNLSMKNCGYVIYGVAHQHSGGTGSMLYGQLMFNDRRVICSSIPSYGKGKDETNYILGMSTCYPRPGSVKIIDGETLTLESN*






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