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Report for Sequence Feature Glyma08g08650

Feature Type:gene_model
Chromosome:Gm08
Start:6154425
stop:6162878
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g08650
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G20910AT Annotation by Michelle Graham. TAIR10: double-stranded RNA binding protein-related / DsRBD protein-related | chr4:11186264-11190575 REVERSE LENGTH=942 SoyBaseE_val: 0ISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0007267GO-bp Annotation by Michelle Graham. GO Biological Process: cell-cell signaling SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009886GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009944GO-bp Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010051GO-bp Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation SoyBaseN/AISS
GO:0010093GO-bp Annotation by Michelle Graham. GO Biological Process: specification of floral organ identity SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0010305GO-bp Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation SoyBaseN/AISS
GO:0010589GO-bp Annotation by Michelle Graham. GO Biological Process: leaf proximal/distal pattern formation SoyBaseN/AISS
GO:0016458GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing SoyBaseN/AISS
GO:0016569GO-bp Annotation by Michelle Graham. GO Biological Process: covalent chromatin modification SoyBaseN/AISS
GO:0016570GO-bp Annotation by Michelle Graham. GO Biological Process: histone modification SoyBaseN/AISS
GO:0030422GO-bp Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0034968GO-bp Annotation by Michelle Graham. GO Biological Process: histone lysine methylation SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0035279GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA cleavage involved in gene silencing by miRNA SoyBaseN/AISS
GO:0048449GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ formation SoyBaseN/AISS
GO:0048451GO-bp Annotation by Michelle Graham. GO Biological Process: petal formation SoyBaseN/AISS
GO:0048453GO-bp Annotation by Michelle Graham. GO Biological Process: sepal formation SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0048507GO-bp Annotation by Michelle Graham. GO Biological Process: meristem development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0008173GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA methyltransferase activity SoyBaseN/AISS
KOG1045 KOG Uncharacterized conserved protein HEN1/CORYMBOSA2 JGI ISS
PTHR21404Panther UNCHARACTERIZED JGI ISS
PF00035PFAM Double-stranded RNA binding motif JGI ISS
PF08241PFAM Methyltransferase domain JGI ISS
UniRef100_UPI0001BE661BUniRef Annotation by Michelle Graham. Most informative UniRef hit: HEN1 n=1 Tax=Arabidopsis thaliana RepID=UPI0001BE661B SoyBaseE_val: 0ISS
UniRef100_UPI0002339137UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339137 related cluster n=1 Tax=unknown RepID=UPI0002339137 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g08650
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08650
ParalogEvidenceComments
Glyma05g25670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08650 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g081600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g08650
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g08650
>Glyma08g08650.1   sequence type=CDS   gene model=Glyma08g08650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAAGAGAACATGTTGCACCAAAAAAACCAATCCTTACACCTAAAGCTATAATACACCAAAATTTTGGCAGTAGGGCTTGCTATGTGGTAGAGGAAGTGAAGGAGGCTCCTCAAACTGAATGTCCAGGATTGAATATTCCACAAATGGGTCCCTGCCTTTACCGTTGCACATTGCAGCTTCCAGAACTTTCTGTTATTTCAGGAACCTTTAGGAAAAAGAAGGATGCAGAGCAATCTGCAGCAGAGATTGCTATAGACAAGCTTGGCATTTGTACAGAGACCATTGATCCTACTCCACAAGAAGCACAAGAAAGTTTAGTATCTCGAATCACCTTCATATTTTCTGAAAAGTTTGTTGTATGTGATCATCCACTCAGTGGTCACATTCGAGCAACTTTGTGGAGGAAAGGTGATCTTTGTGGTTCCATTCCTCTTTCTGTCATTGCTTTCTATGATGCAAAGCTTTTCAACTTGTGCAAATGTATTAATCCTGAGGTGGAGTCAAACCCATTTTTAGTTATTTCATACATAATGAGGGCCACTGCAAACTTACACCAGTTTCTTGCTACTTCTGAACGGCATCTCTGGATTAGAAGGCTGAGTCCATATCCCCAAGATATTATAGAGTCATTGATGAAAGAACATGGTTCACAAAAATGCATACAGGTTACTGCTGTACACATTCCTAGTTCAGTTGAACAATCGATTGAAGCAGTGACTCTTCATATTTCTTCAAGAGAATACTACCTTGATATCATTGCAAATGAACTTGGTTTTGAAGATGCTTCCAATGTTCTGATTTCAAGGAATTTGGGTAAAGCTTCTTCTGAGACAAGACTGTTCTTTACTGCTCCAAAATCATATCTACCGGATCTATCTTCTAAATTTCCAAATGGAAAAGAAACTCTTTATTTAAAGGGATCTCTGAATGTAAGGGCAAGTTACTTTGCCGGGCAAGATATAACCGGTGATGCAATATTAGCATCCATTGGATATACACGGAAATCTAGAGATCTTTTCTATGAGGATGTAACGATTCGGTTATATTACAGGATGCTTCTAGGGAAGACCCCAGGCGGGATTTATAAATTGTCCAGAGAGGCAATGCTTGCATCCGAGTTGCCATCAAGATTCACCTCAAGAGCAAACTGGAGAGGTTCTCTTCCCAGGGATATACTTTGTATGTTTTGCCGCCAGCACCGTCTGTCTGAACCTCTCTTTTCATTTCATCCTATCAAAACAACATCTGGATTATCAGGATCATGTTTGAAGGTTGCAGAATCTGGTGAGAATGTGATTGAGTGTGTCAATGGGTTCTCTGTAACAAGTCCAAAGCATTCAGATTCTGAGTTGTTTAAATGTGAAATAAAATTACTTTCTAGGTGTGGAGATTTGATACTTTTGTGTTCCCCAAAAGATTGTTATAAGAAGCAGAATGATGCTATTCAGAATGCTTCATTGAAAGTTCTATCATGGCTGAACATGTGTTTTAAGAGTATGATTCTCCCTTTTGAGCAGCTTTATGAGACTGTAGACAACTTTAATATTCAGATCTATTCCAAAAACATTATCAGAGATCTTTTAGCAGGCCAATCAACTCACAATGGTCAGCTTAATGGAATTCATTGCAATAAGTTTGTTGAATCAATCTATATGAATTCATCATATGACATGCTGGGAAATATAGTGGACTCATTAAAGATTGAAGGTCCATATTCTGGGGTGTGTCCATCCAGTGGATCTTTACCTTGTATAAGGTATTCAGTTTCTTTGGCTGTAGAGGGTGAGAATCTGAAAGAAGTTATTGAAGTTTGTGATGAGTTTGAGTTTGAAGTGGGAGTTGGTGCTGTGGTTTCCTATGTTGAGGAGGTTGTGATGCAGATGTCTGTTGGTCAGTACGCTTATTTCTCTACAAACTTACTTTCTACTGAGTTGATTTTTGCTGCTTCAGCTGGTGATTCAGTCAAAATGCTGTCCTCGTTAATATCTAAAAAATGTTGTATGGAATATGAAATAAGTTTGATCAGAGTTGCAGAACCTCCTGAGGAAAGAATGGAGCAGGCTCTTTTCAGCCCTCCACTTTCAAAGCAACGAGTGGAATTTGCAGTGCAACAAATTCTAGAATCCCATGCTTCTACTTTGATTGATTTTGGATGTGGTTCTGGAAGCCTTTTGGAAGCATTGTTAAATTATCCAACATCTTTAAAGAAAATGGCTGGTGTAGATATTTCACAGAAGGGTCTTAGCCGTGCTGCAAAGGTTCTTAACTCAAAATTAGTCACAAATTCAGATGCTGGTGGGCACTTGACAAGCATCAAATCAGTAATTCTTTATGAAGGTTCAATTACAAATTTTGGCTCTCAGTTGCATGGATTTGATATCGGTACTTGTTTAGAGGTGATTGAACATATGGATGAAGATCAAGCTTGTCTATTTGGGGATGTGGCATTAAGTTTTTTTCGTCCAAGGATTCTCATTGTTTCAACGCCAAATTTTGAATACAATGTAGTACTCCAGAAGTCGAGTCCTCCAACCCAAGAACAAGAGGAATCAGACGAGAAAACCCTCTTACAATCATGTAAATTTCGTAATCATGATCACAAATTTGAGTGGACCAGAGAGCAGTTCACACAATGGGCATCTGACTTAGCTGCTCGGCACAATTACAATGTGGAGTTTGGTGGGGTCGGTGGTTCTGCTGATGTTGAACCCGGCTATGCTTCACAGATTGCTGTGTTTAAAAGGGATTGGAAACTTGAAGATGATGTACTAAAGCATGCTGATGAACACCATTATAGTATAATATGGGAATGGAATAGTAAAAAAGAATAA
Predicted protein sequences of Glyma08g08650
>Glyma08g08650.1   sequence type=predicted peptide   gene model=Glyma08g08650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAREHVAPKKPILTPKAIIHQNFGSRACYVVEEVKEAPQTECPGLNIPQMGPCLYRCTLQLPELSVISGTFRKKKDAEQSAAEIAIDKLGICTETIDPTPQEAQESLVSRITFIFSEKFVVCDHPLSGHIRATLWRKGDLCGSIPLSVIAFYDAKLFNLCKCINPEVESNPFLVISYIMRATANLHQFLATSERHLWIRRLSPYPQDIIESLMKEHGSQKCIQVTAVHIPSSVEQSIEAVTLHISSREYYLDIIANELGFEDASNVLISRNLGKASSETRLFFTAPKSYLPDLSSKFPNGKETLYLKGSLNVRASYFAGQDITGDAILASIGYTRKSRDLFYEDVTIRLYYRMLLGKTPGGIYKLSREAMLASELPSRFTSRANWRGSLPRDILCMFCRQHRLSEPLFSFHPIKTTSGLSGSCLKVAESGENVIECVNGFSVTSPKHSDSELFKCEIKLLSRCGDLILLCSPKDCYKKQNDAIQNASLKVLSWLNMCFKSMILPFEQLYETVDNFNIQIYSKNIIRDLLAGQSTHNGQLNGIHCNKFVESIYMNSSYDMLGNIVDSLKIEGPYSGVCPSSGSLPCIRYSVSLAVEGENLKEVIEVCDEFEFEVGVGAVVSYVEEVVMQMSVGQYAYFSTNLLSTELIFAASAGDSVKMLSSLISKKCCMEYEISLIRVAEPPEERMEQALFSPPLSKQRVEFAVQQILESHASTLIDFGCGSGSLLEALLNYPTSLKKMAGVDISQKGLSRAAKVLNSKLVTNSDAGGHLTSIKSVILYEGSITNFGSQLHGFDIGTCLEVIEHMDEDQACLFGDVALSFFRPRILIVSTPNFEYNVVLQKSSPPTQEQEESDEKTLLQSCKFRNHDHKFEWTREQFTQWASDLAARHNYNVEFGGVGGSADVEPGYASQIAVFKRDWKLEDDVLKHADEHHYSIIWEWNSKKE*






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