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Report for Sequence Feature Glyma08g08621

Feature Type:gene_model
Chromosome:Gm08
Start:6145936
stop:6147776
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g08621
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G34740AT Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein | chr2:14658730-14660305 FORWARD LENGTH=339 SoyBaseE_val: 1.00E-100ISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004722GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity SoyBaseN/AISS
KOG0698 KOG Serine/threonine protein phosphatase JGI ISS
PTHR13832Panther PROTEIN PHOSPHATASE 2C JGI ISS
PTHR13832:SF144Panther SUBFAMILY NOT NAMED JGI ISS
PF00481PFAM Protein phosphatase 2C JGI ISS
UniRef100_B9SB19UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9SB19_RICCO SoyBaseE_val: 1.00E-107ISS
UniRef100_I1KRC7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRC7_SOYBN SoyBaseE_val: 2.00E-166ISS

Expression Patterns of Glyma08g08621
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g08621 not represented in the dataset
Glyma08g08621 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g08621 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g081400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g08621
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g08621
>Glyma08g08621.1   sequence type=CDS   gene model=Glyma08g08621   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCATGGAATGGAAGACCATATTTTTGCTCAACACAGGAATCTCGACGGTTATGACTTAGGGTTGTATGCAATATTTGATGGTCACTCCGGTCATGAAGTTGCAAAATACTTGCAAAGTCATCTGTTCGAAAATATACTGAGTGAGCCTGAATTCTGGGAAAATCCAGTGCATGCTGTTAAGAAAGCATGTAAAGCCACGGATGATGAGATTTTAGAAAACATAGCTGATTCACGTGGAGGATCAACAGCTGTTGCAGCAATACTAATTAATGGAGTAAAGCTACTGGTAGCCAACATTGGTGATTCTCGAGCAATATCGTGCAAAAATGGTCGAGCAAAACCACTTACTGTGGATCATGAACCAGAGAAGGAAAAAGATCTTATTGAGAGTAGAGGAGGTTTTGTGTCTAAGAAGCCAGGGAATGTTCCCAGAGTGGATGGCCAATTAGAAATGACACGAGCATTTGGAGATGGAAAACTGAAGGAGCACATTACGGCAGAACCAGATGTGACGATTCGGAAGATTGATGAAGACACTGAATTCATCATTTTGGCAAGTGATGGCCTATGGAAGGAGGCTTGTGACTGTATCAGGGATGAGGATGATGCGCAAAAAGCATCCAAGAAGTTAGTCAAAGAAGCTAAATCTCAGGGAAGCTATGATGATATTTCATGCATAGTTATTATATTCTAG
Predicted protein sequences of Glyma08g08621
>Glyma08g08621.1   sequence type=predicted peptide   gene model=Glyma08g08621   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNHGMEDHIFAQHRNLDGYDLGLYAIFDGHSGHEVAKYLQSHLFENILSEPEFWENPVHAVKKACKATDDEILENIADSRGGSTAVAAILINGVKLLVANIGDSRAISCKNGRAKPLTVDHEPEKEKDLIESRGGFVSKKPGNVPRVDGQLEMTRAFGDGKLKEHITAEPDVTIRKIDEDTEFIILASDGLWKEACDCIRDEDDAQKASKKLVKEAKSQGSYDDISCIVIIF*






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