Glyma08g08600 - SoyBase

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Report for Sequence Feature Glyma08g08600

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6134353
stop:	6135274
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G05950	AT	Annotation by Michelle Graham. TAIR10: RmlC-like cupins superfamily protein \| chr3:1781130-1781964 REVERSE LENGTH=229	SoyBase	E_val: 2.00E-84	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0030145	GO-mf	Annotation by Michelle Graham. GO Molecular Function: manganese ion binding	SoyBase	N/A	ISS
GO:0045735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity	SoyBase	N/A	ISS
PF00190	PFAM	Cupin	JGI		ISS
UniRef100_B9SB16	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rhicadhesin receptor, putative n=1 Tax=Ricinus communis RepID=B9SB16_RICCO	SoyBase	E_val: 1.00E-112	ISS
UniRef100_I1KRC2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KRC2_SOYBN	SoyBase	E_val: 3.00E-145	ISS

Expression Patterns of Glyma08g08600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08600

Paralog	Evidence	Comments
Glyma05g25620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g081200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g08600

Limit To All Plant Sequences

>Glyma08g08600.1   sequence type=CDS   gene model=Glyma08g08600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCACTCGTGCACACTTCTTTTGCCTCATGGCTCTCACCTTCACTCTAGCCTTGGCAGCTGATCACAGTCCACTTCAGGATTTCTGTGTGGCAGACCCCAAAAGTCAAGTGCTAGTAAATGGATTGGCTTGCAAGGACCCTACACTAGTAAAGGCCAATGACTTCTTCTTCAGAGGACTTCACCTAGAAGGAAACACATCAAACCCAGTAGGATCCAAGGTGGCTCCAGTTACAGTTTCACAGCTACCAGGACTAAACACTTTAGGAATTTCACTTGCCCGCATTGACTTTGCACCGTGGGGCACAAACCCTCCTCACACTCACCCTCGTGCCACCGAAATCCTCACCGTGATCGAAGGCACTCTTGAAGTTGGTTTCGTGACATCAAACCCCGGAAACCGCCATGTCACCAAAGTGCTGCAAAAGGGTGATGTGTTTGTCTTCCCTGTGGGACTTGTGCACTACCAGAGAAATGTGGGTTATGGCAATGCTGTTGCCATTGCAGCTCTCAGCAGCCAAAACCCGGGGGTTATCACTATTGCTAATGCTGTGTTCGGGGCCACGCCAGACATTGCTAGTGATGTTCTTGCCAAGGCTTTTCAAGTGGACAAAGATGTTGTTGCTGATTTAAAGTCCAAGTTCTAG

Predicted protein sequences of Glyma08g08600

Limit To All Plant Sequences

>Glyma08g08600.1   sequence type=predicted peptide   gene model=Glyma08g08600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVTRAHFFCLMALTFTLALAADHSPLQDFCVADPKSQVLVNGLACKDPTLVKANDFFFRGLHLEGNTSNPVGSKVAPVTVSQLPGLNTLGISLARIDFAPWGTNPPHTHPRATEILTVIEGTLEVGFVTSNPGNRHVTKVLQKGDVFVFPVGLVHYQRNVGYGNAVAIAALSSQNPGVITIANAVFGATPDIASDVLAKAFQVDKDVVADLKSKF*

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