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Report for Sequence Feature Glyma08g08530

Feature Type:gene_model
Chromosome:Gm08
Start:6089913
stop:6092076
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g08530
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G20840AT Annotation by Michelle Graham. TAIR10: FAD-binding Berberine family protein | chr4:11157916-11159535 FORWARD LENGTH=539 SoyBaseE_val: 0ISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008762GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016614GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
PTHR11748Panther D-LACTATE DEHYDROGENASE JGI ISS
PTHR11748:SF29Panther SUBFAMILY NOT NAMED JGI ISS
PF01565PFAM FAD binding domain JGI ISS
PF08031PFAM Berberine and berberine like JGI ISS
UniRef100_G7IMM5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Reticuline oxidase-like protein n=1 Tax=Medicago truncatula RepID=G7IMM5_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KRB4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRB4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g08530
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g08530 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g080500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g08530
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g08530
>Glyma08g08530.1   sequence type=CDS   gene model=Glyma08g08530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAATCAAATTCCCTACCATTTCTTTCTGTTATTGTTCTTCTTCTTCATGTCTCTAACTCTCTAACTACCCCAACAAGAGAGTCCATTCACGACACTTTTCTTCATTGTCTTCAAAGCCACACAACAAACCAACCAGATCATGTTTCAAACATAGTCTATGCGCAAACCAACACATCCTACACCTCAGTTCTTCGAGCCTTTGCTAGAAATGCCAGGTTCAGCGCCCCCTCCACGCAAAAGCCATTACTCATTGTCACACCTCTCAGTGAAAACCAAGTACAAGCCACTGTGGTGTGCGCCAAAAGCATTGGCCTTCAACTCAAAATCAGAAGTGGTGGCCATGATTTTGAAGGTGTTTCATACATCTCCCAGGTACCTTTTATCATCCTTGACATGTTCAATTTTCAAGATGTCACAGTGGACGTGCAAAATGAGATTGCTGTGATTCAAGCTGGTGCAAGTCTTGGACAAGTTTATTACAGGATTTGGGAGAAGAGTAAAGTTCATGGCTTTCCTGCAGGGGCTTGTCCCACTGTAGGGGTTGGTGGCCACTTGAGTGGAGGAGGGTATGGTAACATGATAAGAAAATATGGGTTATCTGTTGATCATGTTGTTGATGCTAAAATTGTTGATGTCAAAGGTAGGATTCTTGACAAGGAATCCATGGGGGAAGATCTTTTCTGGGCAATTAGAGGAGGTGGAGGAGCAAGTTTTGGTGTCATCTTATCATACACAGTTAAACTTGTTCCAGTGCCAGAAAATGTTACAGTTTTTCAAATTGACAAGACTTTGGAGGAAAATGCCACCGATCTAGTTGTTCAATGGCAAAAGGTTGCCCCACACACAGATGATAGGCTTTACTTGAGGCTTGTCTTACAACCTGTAAGTTCCAATTTTGTGAAGGGAAAGAAAACCATAAGAGCTTCAGTTGAGGCTTTGTTTCTAGGAGAAGCTGATGAACTTGTCAAATTGTTGGGGCAGGAGTTTCCTTTGCTGGGACTGAAAAAAGAGCTTTGTCATGAAATGAGGTGGATTGATTCTGTGGTTTGGTGGGCTAATTACAACGATGGATCCTCAGTTAATGCACTTCTTGACCGAAATCATTACTCGGTGCATTCCAACAAAAGGAAATCTGATTATGTTCAGACCCCAATTTCCAAAGATGGGTTTACATGGATATGGAAAAAGATGATTGAATTGGGAAAAGTTAGCATTGTTTTCAACCCTTATGGAGGGAAAATGAATGAGGTCCCTTCTGATGCTACTCCATTTCCTCACCGTGCAGGGAATCTTTACAAGATTCAGTACACTGTGAGTTGGCAAGAACCAGGTGCTGCTGTGGAAAAAAGTTTTTTGAGTCAGATTAGAGTGCTACACAATTACATGACCCCTTTTGTGTCCAAGAATCCAAGGAGTGCATACTTTAACTACAGGGACCTTGATATTGGTATCAATAGCCATGGTAAGGATAACTTTGAAGATGGAAAAGTTTATGGTATCAAGTACTTCAATAAAAATTTTGAAAGGTTGGTGAAGGTTAAGAGTGCCATTGATCCAGAAAACTTTTTCTGGAATGAACAGAGCATTCCAACATATCCAAGAAGCAATGCGTAA
Predicted protein sequences of Glyma08g08530
>Glyma08g08530.1   sequence type=predicted peptide   gene model=Glyma08g08530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKSNSLPFLSVIVLLLHVSNSLTTPTRESIHDTFLHCLQSHTTNQPDHVSNIVYAQTNTSYTSVLRAFARNARFSAPSTQKPLLIVTPLSENQVQATVVCAKSIGLQLKIRSGGHDFEGVSYISQVPFIILDMFNFQDVTVDVQNEIAVIQAGASLGQVYYRIWEKSKVHGFPAGACPTVGVGGHLSGGGYGNMIRKYGLSVDHVVDAKIVDVKGRILDKESMGEDLFWAIRGGGGASFGVILSYTVKLVPVPENVTVFQIDKTLEENATDLVVQWQKVAPHTDDRLYLRLVLQPVSSNFVKGKKTIRASVEALFLGEADELVKLLGQEFPLLGLKKELCHEMRWIDSVVWWANYNDGSSVNALLDRNHYSVHSNKRKSDYVQTPISKDGFTWIWKKMIELGKVSIVFNPYGGKMNEVPSDATPFPHRAGNLYKIQYTVSWQEPGAAVEKSFLSQIRVLHNYMTPFVSKNPRSAYFNYRDLDIGINSHGKDNFEDGKVYGIKYFNKNFERLVKVKSAIDPENFFWNEQSIPTYPRSNA*






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