Glyma08g08510 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g08510

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6078877
stop:	6080786
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G03880	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr2:1181560-1183452 FORWARD LENGTH=630	SoyBase	E_val: 0	ISS
GO:0009451	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA modification	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF124	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_D7LQM3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein (Fragment) n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LQM3_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI000233999E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233999E related cluster n=1 Tax=unknown RepID=UPI000233999E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g08510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08510

Paralog	Evidence	Comments
Glyma05g25530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g080300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g08510

Limit To All Plant Sequences

>Glyma08g08510.2   sequence type=CDS   gene model=Glyma08g08510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAGTGTATCAAAGCACTTACAATTGTTGCGCCCAACAACAAGCTCGCGTTGTTGTTCATACAGTGCTAACTCGTCTCACTCTCATGTATCTCCACACTATGCGCCTCCTGAAACCGAGTCACTACTCAACCATTGTTACCAAAGAGACCTTCCCCGAGCCATGCATGTGTTGGATGCCATGGAAAGACGCGGAGTCTGGGCCGACGCTATTTCCTATTCTGAGCTCATCAAGTGTTGCTTGGCTCATGGTGCTGTCAGGGAACGAAAACGCGTACTGTTCGATAAAATGTCTGAACGAAATGTCGTGTCATGGACTACTTTGATATCTGCTTACTCTAATGCCAAGCTCAATGACAGGGCCATGAGTTTCTTGGTTTTCATCTTTAGGGTTGGTGTCGTGCCTAACATGTTTACTTTCTCTTCGGTTCTGAGGGCGTGTGAGAGTTTGTCTGATCTCAAACAGCTGCATTCTTTGATAATGAAAGTGGGGTTGGAGTCTGATGTATTTGTTCGCAGTGCGCTTATTGATGTTTTTCGTGAGATGGTGACAGGAGATTCTGCTGTTTGGAACTCCATTATTGCTGCTTTTGCTCAGCACAGTGATGGTGATGAGGCTTTACATCTTTACAAGAGCATGAGGAGAGTGGGTTTTCCGGCTGATCACTCGACGCTCACGAGTGTTTTGAGATCGTGTACTAGTTTGTCGTTGTTGGAGTTAGGGAGGCAGGCCCATGTCCATATGCTGAAATTTGACAAAGATCTTATCCTCAACAATGCCCTTTTAGATATGAATTGTAGGTGTGGTACTTTGGAGGATGCAAAGTTCATTTTCAATTGGATGGCCAAGAAGGACGTAATCTCTTGGAGCACCATGATTGCTGGGTTAGCCCAAAATGGTTTTAGTATGGAAGCACTCAATTTATTTGGGTCCATGAAAGTGCAGGATCCAAAACCAAACCATATTACAATTCTTGGGGTTCTGTTTGCGTGTAGTCATGCAGGGCTAGTAAATGAAGGTTGGAACTATTTTCGATCTATGAAGAACCTATATGGGATAGATCCTGGAAGAGAACACTATGGTTGCATGCTTGATCTTCTTGGAAGAGCTGGAAAGCTTGATGACATGGTTAAGTTAATTCATGAAATGAATTGTGAGCCAGATGTTGTGATGTGGAGGACTTTACTTGATGCATGCAGGGTTAATCAGAATGTGGATTTAGCCACGTATGATGCTAAGGAAATTCTAAAGTGGAATGATGTTGCAGAAGTTCGGAGTGCTATGAAAAAAAGGGGCATAAGGAAAGAACCTGGATGTAGCTGGATTGAAGTCAATAAGCAGATACATGCTTTTATTTTGGGAGATAAATCTCATCCTCAAATAGATGAGATCAATAGACAGTTGAACCAATTTATTTGTAGACTAGCGGGTGCTGGGGAACAGAGAGAAGACTCTCTTCGATACCACAGTGAGAAACTGGCAATTGTTTTTGGTATTATGGGCTTTCCAAATGAGAAAACTATTAGAATCTGGAAGAACCTTAAGATCTGCGGAGATTGTCATAAATTTGAAAAACTCATAGCAAAGTTAGAGCAACGGCATATTGTAATTAGAGACCCTATTCTATACCATCATTTTCAAGATGGGGTTTGCTCCTGTGGTGACTATTGGTAG

Predicted protein sequences of Glyma08g08510

Limit To All Plant Sequences

>Glyma08g08510.2   sequence type=predicted peptide   gene model=Glyma08g08510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSVSKHLQLLRPTTSSRCCSYSANSSHSHVSPHYAPPETESLLNHCYQRDLPRAMHVLDAMERRGVWADAISYSELIKCCLAHGAVRERKRVLFDKMSERNVVSWTTLISAYSNAKLNDRAMSFLVFIFRVGVVPNMFTFSSVLRACESLSDLKQLHSLIMKVGLESDVFVRSALIDVFREMVTGDSAVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADHSTLTSVLRSCTSLSLLELGRQAHVHMLKFDKDLILNNALLDMNCRCGTLEDAKFIFNWMAKKDVISWSTMIAGLAQNGFSMEALNLFGSMKVQDPKPNHITILGVLFACSHAGLVNEGWNYFRSMKNLYGIDPGREHYGCMLDLLGRAGKLDDMVKLIHEMNCEPDVVMWRTLLDACRVNQNVDLATYDAKEILKWNDVAEVRSAMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGEQREDSLRYHSEKLAIVFGIMGFPNEKTIRIWKNLKICGDCHKFEKLIAKLEQRHIVIRDPILYHHFQDGVCSCGDYW*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain