SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g08500

Feature Type:gene_model
Chromosome:Gm08
Start:6076189
stop:6078037
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g08500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G30700AT Annotation by Michelle Graham. TAIR10: FAD-binding Berberine family protein | chr1:10892623-10894437 FORWARD LENGTH=527 SoyBaseE_val: 0ISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008762GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016614GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
PTHR11748Panther D-LACTATE DEHYDROGENASE JGI ISS
PTHR11748:SF29Panther SUBFAMILY NOT NAMED JGI ISS
PF01565PFAM FAD binding domain JGI ISS
PF08031PFAM Berberine and berberine like JGI ISS
UniRef100_B9SAZ6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Reticuline oxidase, putative n=1 Tax=Ricinus communis RepID=B9SAZ6_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI0002339132UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339132 related cluster n=1 Tax=unknown RepID=UPI0002339132 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g08500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g08500 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g080200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g08500
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g08500
>Glyma08g08500.1   sequence type=CDS   gene model=Glyma08g08500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGTGATCCTACCCTTTGTCTCAATCTTTCTGCTCCATGTTCTAACGGCAACCTCAGAGACCATTCTCCAATGCCTCTCTCTCCATTCTGACCCTTCTCGTCCAATCTCTGCAGTCACCTATTTCCCAAAAAACCCTTCATACCCTCCCATTTTGGAGGCCTACATCAGAAACCTGAGGTTCAGTTCCCCCACAACCCCAAAACCAACCTTCATTGTTGCACCAACACACGTGTCCCACATCCAAGCCTCCATCATCTGCTGCAAAAGGTTCAATCTTGAGATCAGAACAAGAAGTGGGGGGCACGACTTTGAAGGCCTCTCGTACATGTCACAAACCCCATTTGTGATTGTGGACATGTTCATGCTGAAATCAGTGGAGGTCGACGTCGAGGACCAGACAGCGTGGGTTGACTCGGGGTCAACGATTGGTGAGCTTTACTATGCTATTGCTGAGAAGAGTAGGGTCCTAGGTTTCCCTGCTGGTGTGTGTCACAGTGTTGGTGTTGGAGGGCATTTCAGTGGAGGAGGGTATGGGAACATGATGAGAAGGTTTGGTCTCTCAGTGGATAATGTTTTGGATGCCCTAATTGTGGATTCTGAAGGAAGAGTCTTGGATAGGGCAACAATGGGTGAAGATCTTTTCTGGGCCATTAGAGGAGGTGGTGGTGCTAGCTTTGGGGTTATTGTTTCATGGAAAATTAGGTTAGTTCCTGTGCCTGAGGTTGTCACGGTTTTCAGAATTGAAAAAACATTGGAACAAGATGCCAGTGATCTTGTTTTTCAGTGGCAGTATGTTGCTGATAAGATACACGATGGCTTGTTCATTAGGGTGGTTCTTAGTCCCGTGACGAGATCGGATCGGAAGACAATAAAGGCCAAGTTCAATGCCTTGTTTCTTGGAAATTCACAAGAGCTTCTTTCTGTGATGAATCAAAGTTTCCCTCAACTGGGTTTGGTTGCCGAACAGTGCATTCAAATGAGTTGGATTCAGTCGGTGTTGTTTTGGGATAACTATCCGGTGGGGACTTCGGTTGATGTTTTGCTTCAAAGACATGCAACAAAAGAGAAATTCTTGAAGAAGAAATCAGATTATGTGCAGCAACCTATCTCCAAAGCTGCCCTTGAAGGTATATGGAAGATGATGATGGAACTAGAAAAGCCTGTTTTCACATTCAACCCCTATGGTGGGAAAATGGGTGAGATTTCTGAGTTCGAAACACCGTTTCCACATAGATTTGGTAACATATTTAAAATTCAGTACTCTGTGAGTTGGGATGAGGAGGGTGAAGATGTTGCTAAACAATATTTATATCAGATTCGGAGGCTATATGATTACATGACTCCTTATGTGTCATACTCACCTAGAAGTTCATATCTGAACTATAGAGATGTTGATATAGGCGTCAATGGCCCTGGAAATGCTACTTATGCACAGGCTAGTGTTTGGGGTAGGAAGTATTTCAAGAGAAATTTTGATAGGCTGGTGCAGGTAAAGACCAAGGTAGATCCTAGCAATTTTTTCAGATATGAACAGAGTATTCCATCACTTGCATCTGCTCATAGTATAGTGTCAGAAAAGAAGAAGCCTTGA
Predicted protein sequences of Glyma08g08500
>Glyma08g08500.1   sequence type=predicted peptide   gene model=Glyma08g08500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVILPFVSIFLLHVLTATSETILQCLSLHSDPSRPISAVTYFPKNPSYPPILEAYIRNLRFSSPTTPKPTFIVAPTHVSHIQASIICCKRFNLEIRTRSGGHDFEGLSYMSQTPFVIVDMFMLKSVEVDVEDQTAWVDSGSTIGELYYAIAEKSRVLGFPAGVCHSVGVGGHFSGGGYGNMMRRFGLSVDNVLDALIVDSEGRVLDRATMGEDLFWAIRGGGGASFGVIVSWKIRLVPVPEVVTVFRIEKTLEQDASDLVFQWQYVADKIHDGLFIRVVLSPVTRSDRKTIKAKFNALFLGNSQELLSVMNQSFPQLGLVAEQCIQMSWIQSVLFWDNYPVGTSVDVLLQRHATKEKFLKKKSDYVQQPISKAALEGIWKMMMELEKPVFTFNPYGGKMGEISEFETPFPHRFGNIFKIQYSVSWDEEGEDVAKQYLYQIRRLYDYMTPYVSYSPRSSYLNYRDVDIGVNGPGNATYAQASVWGRKYFKRNFDRLVQVKTKVDPSNFFRYEQSIPSLASAHSIVSEKKKP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo