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Report for Sequence Feature Glyma08g08490

Feature Type:gene_model
Chromosome:Gm08
Start:6072112
stop:6073701
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g08490
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G44400AT Annotation by Michelle Graham. TAIR10: FAD-binding Berberine family protein | chr5:17886365-17888071 REVERSE LENGTH=537 SoyBaseE_val: 0ISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008762GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016614GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
PTHR11748Panther D-LACTATE DEHYDROGENASE JGI ISS
PTHR11748:SF29Panther SUBFAMILY NOT NAMED JGI ISS
PF01565PFAM FAD binding domain JGI ISS
PF08031PFAM Berberine and berberine like JGI ISS
UniRef100_G7IMM0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Reticuline oxidase n=1 Tax=Medicago truncatula RepID=G7IMM0_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KRB0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KRB0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g08490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08490
ParalogEvidenceComments
Glyma05g25500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08490 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g080100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g08490
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g08490
>Glyma08g08490.1   sequence type=CDS   gene model=Glyma08g08490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAATTCAATGGTAAACCTAGTTTTCCTTTCTCTCACCCTTTTCATTTCAATTTTCCCTGCAACTTCTACTTTTGCTGGCCACCAGAAAGGTTTCCTTCAATGTTTTCAAACAATGTTAGGAGTTGACAACACAACTTCAGGAGTAATATTCACCAAAACTAGTTCTTCTTATGAACCCATTTTGGAGTCTTCTATAAGAAACGCCAGATTCCTTAACAGTTCAGCCCCAAAACCAAACCTTATTGTTACACCACATAGCCTATTCCACATCCAAGTAGCACTCTTTTGCTCAAAGAAAAGTGGCTTACAAGTAAGAATTCGAAGTGGGGGCCATGACTATGAGGGCCTTTCTTATGTCTCTCATTCTCACATTCCATTCTTGATCATTGATCTTGTCAACCTTAGGTCTATAACCATTAACATGGACGAAGAAACTGCATGGGTACAATCAGGTGCTACAGTTGGAGAACTCTATTATGCAATTGCAAAGAAAAGTAAGGTCCATGGTTTCCCAGCTGGAAGTTGTTCCACTATTGGTATTGGAGGGCACTTGAGTGGAGGTGGGTTTGGTACAATTTTCAGAAAATATGGCTTAGGTTCTGATAATGTAATTGATGCTCAGATTATAGATGTTAACGGGAAGATACTGAACAGAACACTGATGGGAGAAGATCTCTTTTGGGCCATAAGAGGAGGAGGAGGGTCTAGCTTTGGAGTCATTACTGCATGGAAAATCAAACTTGTACCTGTTCCTTCAAAAGTCACAACTTTTGATGTTTCAAGGACCCTTGATCAAGGTGCCACTACCCTTTTCCACAAATGGCAAACTATCGCTCCCAAACTTCCAAAAGAACTTTTCTTGCACACTGTTGTGGGAGTTACCAATTCAGCTTCTCAAGAAGGTGGAAAAACTGTGGTGGTTTCCTTCTCCGGACTGTATCTTGGGACACCTGAGAATCTCCTTACTTTGATGCAAAACAGTTTTGCAGAATTAGGTTTGCGGCGCGACAACTTCACCGAGATGACTTGGATTCAATCCGTTCTTCACTATGCAGGCTTTTCAATTGATGAATCCTTGGAGATCCTGCTCAGGAGAAACCATTCACCTCCATCTTTCAAAGCAAAATCTGATTATGTGAAGGAACCGATTCCGTTACGTGGCTTAGAAGGGCTGTGGAAGATGCTACTCTTGGATAACTCACCACTGTTGATCCTCACACCATATGGTGGAATAATGAGTGAGATTTCAGAATCAGAAACTCCGTTTCCACACAGAAAAGGGAACTTATATGGTATCCAGTATATGGTGAATTTTGCTTCAAATGAAGATGCGCCAAAGCATATAGATTGGATAAGAAGATTGTATGCATATATGACACCTTATGTGTCAAAGTTTCCAAGACGAGCATATTTGAATTATAGAGACCTTGATTTGGGAGCCAACCAAGGGAAACCGTGGTATGAAAAAGCAAAATCTTGGGGTTTGAAATATTTCAATTGCAATTTTGAAAGGCTGGCACTAGTGAAGGCCAGGGTTGATCCTGGAAATTTTTTCAGGGATGAGCAGAGCATTCCTCCATTGTAG
Predicted protein sequences of Glyma08g08490
>Glyma08g08490.1   sequence type=predicted peptide   gene model=Glyma08g08490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANSMVNLVFLSLTLFISIFPATSTFAGHQKGFLQCFQTMLGVDNTTSGVIFTKTSSSYEPILESSIRNARFLNSSAPKPNLIVTPHSLFHIQVALFCSKKSGLQVRIRSGGHDYEGLSYVSHSHIPFLIIDLVNLRSITINMDEETAWVQSGATVGELYYAIAKKSKVHGFPAGSCSTIGIGGHLSGGGFGTIFRKYGLGSDNVIDAQIIDVNGKILNRTLMGEDLFWAIRGGGGSSFGVITAWKIKLVPVPSKVTTFDVSRTLDQGATTLFHKWQTIAPKLPKELFLHTVVGVTNSASQEGGKTVVVSFSGLYLGTPENLLTLMQNSFAELGLRRDNFTEMTWIQSVLHYAGFSIDESLEILLRRNHSPPSFKAKSDYVKEPIPLRGLEGLWKMLLLDNSPLLILTPYGGIMSEISESETPFPHRKGNLYGIQYMVNFASNEDAPKHIDWIRRLYAYMTPYVSKFPRRAYLNYRDLDLGANQGKPWYEKAKSWGLKYFNCNFERLALVKARVDPGNFFRDEQSIPPL*






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