Glyma08g08450 - SoyBase

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Report for Sequence Feature Glyma08g08450

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6049581
stop:	6053400
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03670	AT	Annotation by Michelle Graham. TAIR10: ankyrin repeat family protein \| chr1:914222-916222 REVERSE LENGTH=616	SoyBase	E_val: 1.00E-42	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4412	KOG	26S proteasome regulatory complex, subunit PSMD10	JGI		ISS
PTHR24198	Panther	ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAININ	JGI		ISS
PTHR24198:SF302	Panther		JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
UniRef100_B9RTE9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RTE9_RICCO	SoyBase	E_val: 6.00E-101	ISS
UniRef100_I1KRA6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KRA6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g08450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08450

Paralog	Evidence	Comments
Glyma05g25435	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g079800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g08450

Limit To All Plant Sequences

>Glyma08g08450.2   sequence type=CDS   gene model=Glyma08g08450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATACAACCAGCAGCAGATTTGGATGAAGAAGATATTTCAGCAGTTTCATCACGACTGCTATCATTATCATCACCATCATCATTCCTGTTACCGTACCAAACTGATGACAGTAATCAGAATTTCACGCGCATTGATCGTAAATTATACGTTGCTGCGATGAAAGGCGACTTCCAAGAACTCTCCAATGAACAGAATTTGGAGAGTCTGCTCACCCCAAACAAAAACACCGTCCTTCATATACACTTGACTTCTACAACAAGTCAAACAGTTTCAGAAGAATTTGTGACTAAGATTCTTAAGGAGTGTGGATGTCTAGTTCTACTCCCTAACGCCAAGAGAGAAACAGTCCTTCACATCGCTGCAAGGTATGGACACTCCAATATCGCTAAATTATTGCTTGAACATGTCAAAGCTTTTCCACCTTCAGATATTGAGAAAGGTATTGGAGCAGAAAAGAAGTTTATGAGGGCCACAAATAATGAGAAGGACACTGCATTGCATGAGGCTGTGCGCTATCATCACATTGAAGTAGTGAAGACCTTGTTAGAAATGGATCCTGATTACTCCTATGATGCAAATAATGCCGATGAGACTCCGCTTTATCTGGCATCACAACGACAAAATCAGCAAGTGGTGGCTGAGATATTAAACAAAATGAAATCACCGGCATATGGTGGCCCCAATAATAGAACAGCATTGCATGCTGCTGTGATTAACCAAGATATAGTAATGGCAAGAGATCTTGTGAAGAATAAACATGTGAGAAAGGCTGTGAAACATGCGGACAAGGAAGGTTGGATTCCTCTTCATTATGCTGTGAAAACAGGGAATTTAGGTTTGACGAAGTTGCTGCTTGCACAAGATGGGAACACAGCATACATGCAAGATAATGAGGGCATGACAGCTCTTCACATCGCTGCTTATGATGGTGATTGGCTTATTATGAACATGATAATAGAATACTATCCAGATTGTTCTGAGATAGTGGATAAAAAAGGCTTGAATGTTCTTCATTATGCTGTCAATGGGGGGAGTGGAACTACAGTGGATATAATCATGGAGAACCTATCGCTAAGCAACCTTTACAGTGAGAAAGACTTTGATGGAAACACACCCATTCATCACCTCACCAATTCCAACCTTATGTGTGAGAGTTTTGTATTTCACCGCAGAGTTGACAAGCTGGCCGTCAACAAGGAAGCTCAAACAGCTCTTGATGTTGCCTATTATCAAAAATCAAAGAACGGGCAAGAAAAGACTCAAAGGGTAGTGTTAACTAAGGAAGCAAAGGAGACTCATCTTTTAGTGGCCACACTCATTGCAACCGTAAGTTTTGCAGCTGGGATTACTGTACCAGGAGGTACCATACAAGATGGTGAAAATAAAGGTAGCCCAGTTTTGGTGCAAAGTAGTTTTTTCAAAGCATTCATGGTATCAAACACCATATCAATGGTTCTGGCCGCTACTGCAGTTTCTATATATCTTTTCACGCCAGTGACTAGAAATAAAAGGAAGGAAAATGCTTTCTCTAAAACAGCCCTCGTATTCACTTTGATCGCCTTAGCAGCAATGATCATTGCATTCATTACAGGCACGTATGTCGTATTGGAATCATCCCGAGTAATTGCTGTTGCAATTTTCCTTATTGGGTTATCCTCTTTTATGTTAGCATACTATCCCGATAATTCAAGACGAAAAGATAAGCAAATCAGAGAATATCCTAACAGTACATAA

Predicted protein sequences of Glyma08g08450

Limit To All Plant Sequences

>Glyma08g08450.2   sequence type=predicted peptide   gene model=Glyma08g08450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIQPAADLDEEDISAVSSRLLSLSSPSSFLLPYQTDDSNQNFTRIDRKLYVAAMKGDFQELSNEQNLESLLTPNKNTVLHIHLTSTTSQTVSEEFVTKILKECGCLVLLPNAKRETVLHIAARYGHSNIAKLLLEHVKAFPPSDIEKGIGAEKKFMRATNNEKDTALHEAVRYHHIEVVKTLLEMDPDYSYDANNADETPLYLASQRQNQQVVAEILNKMKSPAYGGPNNRTALHAAVINQDIVMARDLVKNKHVRKAVKHADKEGWIPLHYAVKTGNLGLTKLLLAQDGNTAYMQDNEGMTALHIAAYDGDWLIMNMIIEYYPDCSEIVDKKGLNVLHYAVNGGSGTTVDIIMENLSLSNLYSEKDFDGNTPIHHLTNSNLMCESFVFHRRVDKLAVNKEAQTALDVAYYQKSKNGQEKTQRVVLTKEAKETHLLVATLIATVSFAAGITVPGGTIQDGENKGSPVLVQSSFFKAFMVSNTISMVLAATAVSIYLFTPVTRNKRKENAFSKTALVFTLIALAAMIIAFITGTYVVLESSRVIAVAIFLIGLSSFMLAYYPDNSRRKDKQIREYPNST*

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