Report for Sequence Feature Glyma08g08430
Feature Type: gene_model
Chromosome: Gm08
Start: 6040931
stop: 6043635
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g08430
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G37930 AT
Annotation by Michelle Graham. TAIR10: Protein with RING/U-box and TRAF-like domains | chr5:15102239-15103651 REVERSE LENGTH=349
SoyBase E_val: 2.00E-68 ISS
GO:0006511 GO-bp
Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process
SoyBase N/A ISS
GO:0007275 GO-bp
Annotation by Michelle Graham. GO Biological Process: multicellular organismal development
SoyBase N/A ISS
GO:0016567 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein ubiquitination
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0004842 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG3002
KOG
Zn finger protein
JGI ISS
PTHR10315 Panther
SEVEN IN ABSENTIA HOMOLOG
JGI ISS
PTHR10315:SF3 Panther
SEVEN IN ABSENTIA HOMOLOG
JGI ISS
PF03145 PFAM
Seven in absentia protein family
JGI ISS
UniRef100_G8A1C0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase SINA-like protein n=1 Tax=Medicago truncatula RepID=G8A1C0_MEDTR
SoyBase E_val: 9.00E-127 ISS
UniRef100_I1KRA5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRA5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g08430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g08430
Paralog Evidence Comments
Glyma05g25420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g08430 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g079600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g08430
Coding sequences of Glyma08g08430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g08430.1 sequence type=CDS gene model=Glyma08g08430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGAAAATCTCACTTGGTGGATACGATGATGGGGAAGGACCCAGCAACCGAACCCATAAGCGACGCAGGGAAGATGATGATGACGACGACGAAGAAGAGCAACAACAACAACGAAGCTTTGAGATGGTGGACCCTTCAATAGGAACTCAAGAGAACGAAGATCATGCTGCTCCATCCAATGATGGATCGAATTCTAACGGAAATGGGGCTGGAACCAGTACCCGGGATAGGTCCGTTCCTATCTTCGTTTCCGACCCTGATGTCCTTGATTGCTGCATTTGCTATGAACCCTTGACTTCCCCTGTGTTCCAGTGTGAGAATGGACATATTGCTTGCTCTATTTGCTGTGTGAGACTCAGTAACAAGTGTCCCATGTGTTCAATGCCCATTGGGTATAACCGTTGCCGGGCTATTGAGAAGGTCTTGGAGTGTATTAAAATGTCATGCCCGAATGCAAATTATGGCTGCAAAGAGACACTTAGTTACAGCAAGAAAAACGAACATGAGAAGGAATGCATCTATCTGCCATGTTCATGCCCTTTTACTGGTTGTGATTTTATTGCCTCATCCAAGGAGTTATTCCTCCACTTTAGCCATAGACATGTAGGCTCTGGAACACAGTTTACATATGATAAATTTTTCACTGTCTTCTTAAGTATTAACCAGAGAACAGTTGTTCTTAAAGAGAAAAGTGATGGTAATCTGTTCGTTGTTCACAATAACCTCGAGCATCTGGGGAACATAGTCCGCATTAGCTGCATTGGTCCCAAGTCCACGACAGAGTTTCAGTATGAAGTCTTGGCTAGGCATCAAGGAAACGCTTTGATTCTACAATCTTTTACCAAGATTGTGCAAGGGCAATATACTGATGCTCCATCTAGTACGTTCCTTTTGATTCCGTCTTGTTTGTTTGGCTCTCCACATCTGAAACTGGATATTCGCATAAAGTCACACCATTAA
Predicted protein sequences of Glyma08g08430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g08430.1 sequence type=predicted peptide gene model=Glyma08g08430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVKISLGGYDDGEGPSNRTHKRRREDDDDDDEEEQQQQRSFEMVDPSIGTQENEDHAAPSNDGSNSNGNGAGTSTRDRSVPIFVSDPDVLDCCICYEPLTSPVFQCENGHIACSICCVRLSNKCPMCSMPIGYNRCRAIEKVLECIKMSCPNANYGCKETLSYSKKNEHEKECIYLPCSCPFTGCDFIASSKELFLHFSHRHVGSGTQFTYDKFFTVFLSINQRTVVLKEKSDGNLFVVHNNLEHLGNIVRISCIGPKSTTEFQYEVLARHQGNALILQSFTKIVQGQYTDAPSSTFLLIPSCLFGSPHLKLDIRIKSHH*