Glyma08g08430 - SoyBase

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Report for Sequence Feature Glyma08g08430

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6040931
stop:	6043635
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G37930	AT	Annotation by Michelle Graham. TAIR10: Protein with RING/U-box and TRAF-like domains \| chr5:15102239-15103651 REVERSE LENGTH=349	SoyBase	E_val: 2.00E-68	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG3002	KOG	Zn finger protein	JGI		ISS
PTHR10315	Panther	SEVEN IN ABSENTIA HOMOLOG	JGI		ISS
PTHR10315:SF3	Panther	SEVEN IN ABSENTIA HOMOLOG	JGI		ISS
PF03145	PFAM	Seven in absentia protein family	JGI		ISS
UniRef100_G8A1C0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase SINA-like protein n=1 Tax=Medicago truncatula RepID=G8A1C0_MEDTR	SoyBase	E_val: 9.00E-127	ISS
UniRef100_I1KRA5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRA5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g08430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08430

Paralog	Evidence	Comments
Glyma05g25420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g079600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g08430

Limit To All Plant Sequences

>Glyma08g08430.1   sequence type=CDS   gene model=Glyma08g08430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAAATCTCACTTGGTGGATACGATGATGGGGAAGGACCCAGCAACCGAACCCATAAGCGACGCAGGGAAGATGATGATGACGACGACGAAGAAGAGCAACAACAACAACGAAGCTTTGAGATGGTGGACCCTTCAATAGGAACTCAAGAGAACGAAGATCATGCTGCTCCATCCAATGATGGATCGAATTCTAACGGAAATGGGGCTGGAACCAGTACCCGGGATAGGTCCGTTCCTATCTTCGTTTCCGACCCTGATGTCCTTGATTGCTGCATTTGCTATGAACCCTTGACTTCCCCTGTGTTCCAGTGTGAGAATGGACATATTGCTTGCTCTATTTGCTGTGTGAGACTCAGTAACAAGTGTCCCATGTGTTCAATGCCCATTGGGTATAACCGTTGCCGGGCTATTGAGAAGGTCTTGGAGTGTATTAAAATGTCATGCCCGAATGCAAATTATGGCTGCAAAGAGACACTTAGTTACAGCAAGAAAAACGAACATGAGAAGGAATGCATCTATCTGCCATGTTCATGCCCTTTTACTGGTTGTGATTTTATTGCCTCATCCAAGGAGTTATTCCTCCACTTTAGCCATAGACATGTAGGCTCTGGAACACAGTTTACATATGATAAATTTTTCACTGTCTTCTTAAGTATTAACCAGAGAACAGTTGTTCTTAAAGAGAAAAGTGATGGTAATCTGTTCGTTGTTCACAATAACCTCGAGCATCTGGGGAACATAGTCCGCATTAGCTGCATTGGTCCCAAGTCCACGACAGAGTTTCAGTATGAAGTCTTGGCTAGGCATCAAGGAAACGCTTTGATTCTACAATCTTTTACCAAGATTGTGCAAGGGCAATATACTGATGCTCCATCTAGTACGTTCCTTTTGATTCCGTCTTGTTTGTTTGGCTCTCCACATCTGAAACTGGATATTCGCATAAAGTCACACCATTAA

Predicted protein sequences of Glyma08g08430

Limit To All Plant Sequences

>Glyma08g08430.1   sequence type=predicted peptide   gene model=Glyma08g08430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKISLGGYDDGEGPSNRTHKRRREDDDDDDEEEQQQQRSFEMVDPSIGTQENEDHAAPSNDGSNSNGNGAGTSTRDRSVPIFVSDPDVLDCCICYEPLTSPVFQCENGHIACSICCVRLSNKCPMCSMPIGYNRCRAIEKVLECIKMSCPNANYGCKETLSYSKKNEHEKECIYLPCSCPFTGCDFIASSKELFLHFSHRHVGSGTQFTYDKFFTVFLSINQRTVVLKEKSDGNLFVVHNNLEHLGNIVRISCIGPKSTTEFQYEVLARHQGNALILQSFTKIVQGQYTDAPSSTFLLIPSCLFGSPHLKLDIRIKSHH*

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