Glyma08g08410 - SoyBase

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Report for Sequence Feature Glyma08g08410

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6032627
stop:	6034317
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20790	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein \| chr4:11134775-11136423 REVERSE LENGTH=518	SoyBase	E_val: 2.00E-141	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF3	Panther	LEUCINE-RICH REPEAT FAMILY PROTEIN	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_G8A1C2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G8A1C2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KRA3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KRA3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g08410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08410

Paralog	Evidence	Comments
Glyma05g25390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g079400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g08410

Limit To All Plant Sequences

>Glyma08g08410.2   sequence type=CDS   gene model=Glyma08g08410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCATGGCTATTTCTTCAACTTGGTACTTGTTTCTTCCTATAATTTTATCGTTATGTCTCATAACACTATGTGGAACAGTGCTAGAAGACCTCAAAAACTTACACCAACCACCAGATTTTAACACTACAATTTTCTCCAAGTGTCTCAAGAACCCCTCTCTTAGGTACTGCAGTTCCAATCCCATGATGGACCTTGAAAAAATATTAGGATTCACTATTGTTGCAAGCTATCTCTGCAATGAACCAAAGAACCCTAATTGTGTGGAGTCATTCCCCAAAGTTGATCTTAGAAACCGACCAAACATTGCACCTCTTTATTTGTCCTTTGATTTCTTTTGGAAGTACTTTCCCTTAAGCATTATTTCCATTGACTTGTCCAACAATTCTATGAAGGGTGATTTTCCAATTGATGTTCTCCATTGCACCCAAATTCAGTCTCTTGATTTAAGTATCAATGCATTTTCTGGTGACATTCCAATTCAAAGTTTCTCTCCCCTTATCAACCTCACTTTTCTCAACCGCTCCTATAATTGCTTTTCAGAGAGTAAACTCTCTGATTCCCAATTCTCCAAAAGGTTTAACTCTTCTAGTTTTCTTCATTCTGGTGCTCTTTTGGATCAAAAAAGGTTTACAGTTAAGGCTGTTTTTCTATTGGTTGGCTTTCCCATCCTTGTCATTTTGATGGTAATTTACTTGGCAGCAATTGATGGTTTTTCAAATAAGTATTTGGTAGGAAAGAGTGATGTTGTTCACATCTACAAAGGGATCTTGAGAGATGGTACTGAAGTGAAAATTGAGATGTACTGGGATGATATACCGAGGGATAGTTACCGTAAATTTGTCGAAGAATTTAATGTTCTGTCAAAGTTACACCACAAGAACCTTTTTAGAGTTCTGGGGTGGTGTAGGAGCAGAAAATTCAGGTCCATTATAACAGAATGGACAAGAGAAGAAAATGTTGAAATAGTGAAAGTGTTAATGAGAGTTGTGGAATGCATGCGTTATCTGCAGGATGAATGGCCTGAAGTTGACTATGAACTCAACACAAGTAGTATTTTATTGTCTGACAAAATGGAACCATTAATTTCGAGGTTCAAAGTTGGAGATCAAAACAGCAACCGAAGAAAGGTGCAGGAGCAGTTTGATGGAGGTGATGCTGGATTTATTAGGTACTTAAGAACCCTTAATCCTGCAGATTTGCAGCAAAAAATTGATGAGAGAATGGAAGTAACTGAAACAAATTTTCATCAAGTTAAACAGGCATTGTCTATAGGATTAATGTGCATAGACCAATCAAACAGTGAGAAGCCAAGCTTGGGCATGATATTTAACACTATAGCAAGAGGCTACAAGGCTAGCCTCGTGTCTGCAAATCATAGAATATCTCACGGGGAGAAATTTAAGGGACACATGCATGTTCAAACCTGA

Predicted protein sequences of Glyma08g08410

Limit To All Plant Sequences

>Glyma08g08410.2   sequence type=predicted peptide   gene model=Glyma08g08410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIMAISSTWYLFLPIILSLCLITLCGTVLEDLKNLHQPPDFNTTIFSKCLKNPSLRYCSSNPMMDLEKILGFTIVASYLCNEPKNPNCVESFPKVDLRNRPNIAPLYLSFDFFWKYFPLSIISIDLSNNSMKGDFPIDVLHCTQIQSLDLSINAFSGDIPIQSFSPLINLTFLNRSYNCFSESKLSDSQFSKRFNSSSFLHSGALLDQKRFTVKAVFLLVGFPILVILMVIYLAAIDGFSNKYLVGKSDVVHIYKGILRDGTEVKIEMYWDDIPRDSYRKFVEEFNVLSKLHHKNLFRVLGWCRSRKFRSIITEWTREENVEIVKVLMRVVECMRYLQDEWPEVDYELNTSSILLSDKMEPLISRFKVGDQNSNRRKVQEQFDGGDAGFIRYLRTLNPADLQQKIDERMEVTETNFHQVKQALSIGLMCIDQSNSEKPSLGMIFNTIARGYKASLVSANHRISHGEKFKGHMHVQT*

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