Report for Sequence Feature Glyma08g08400
Feature Type: gene_model
Chromosome: Gm08
Start: 6025520
stop: 6031389
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g08400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G44450 AT
Annotation by Michelle Graham. TAIR10: methyltransferases | chr5:17914360-17916017 REVERSE LENGTH=334
SoyBase E_val: 7.00E-137 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008168 GO-mf
Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity
SoyBase N/A ISS
PTHR12753 Panther
AD-003 - RELATED
JGI ISS
PF05891 PFAM
Putative hydroxyindole-O-methyltransferase
JGI ISS
UniRef100_G8A1C6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Methyltransferase-like protein 11A n=1 Tax=Medicago truncatula RepID=G8A1C6_MEDTR
SoyBase E_val: 4.00E-167 ISS
UniRef100_I1KRA2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KRA2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g08400
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g08400
Paralog Evidence Comments
Glyma05g25380 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g08400 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g079300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g08400
Coding sequences of Glyma08g08400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g08400.1 sequence type=CDS gene model=Glyma08g08400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACGCCGCCGGCTTAGATTCCGATGGCCGTGAATTCAAAACCCCCGAGGACATGTGGAGGGAACAGGCGGGTGACCCTAGCAAGAAGACCCAGTGGTATCGCGACGGCGTCTCCTACTGGGAGGGTGTTAAGGCAAATATGGATGGGGTATTGGGAGGGTTTGCAAATGTGAACGAGCCTGACATAACTTGCAGTGAGGATTTCTTGAACATTCTCTTCTCTGAACGTTTTCATGCTGCTGATGCCAGACACCAACCACTTGTTGTTCTTGATTGTGGTTCTGGCATTGGCAGAGTCACCAAAAATCTGTTAATAAGATACTTCAATGAGGTTGATCTTCTGGAGCCAGTATCACATTTCTTAGAGACTGCACGTGAAACTTTGGCTCTAGGATGTCAGACAAATTCAGATATGCACAAAGCAGTTAATTTTTACTGTGTTCCTCTTCAGGATTTTACACCAGATACTGCAAGATATGATGTAATATGGATTCAATGGTGCATTGGTCATCTTACAGATGAAGATTTTGTTTCATTTTTCAAGAGAGCCAAGGTTGGCCTCAAACCAGGTGGATTTTTTGTCCTGAAGGAGAATATTGCCAGATCTGGATTTGTGCTTGATAATGAAGACCGAAGTGTTACAAGATCTGATTTGTACTTCAAAGAGCTATTTTCTCGATGTGGATTGCATGTTTACAAATCAAAGGATCAGAAAGGATTCCCTGAAGAATTATTTGCTGTGAAGATGTATGCATTAACTACAGACCCTCCAAAGAAGGCTCCCCGAGCAAAATCCAAAACATCAACTAATAGACCTAGAACTATTATGTGA
Predicted protein sequences of Glyma08g08400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g08400.1 sequence type=predicted peptide gene model=Glyma08g08400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDAAGLDSDGREFKTPEDMWREQAGDPSKKTQWYRDGVSYWEGVKANMDGVLGGFANVNEPDITCSEDFLNILFSERFHAADARHQPLVVLDCGSGIGRVTKNLLIRYFNEVDLLEPVSHFLETARETLALGCQTNSDMHKAVNFYCVPLQDFTPDTARYDVIWIQWCIGHLTDEDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDNEDRSVTRSDLYFKELFSRCGLHVYKSKDQKGFPEELFAVKMYALTTDPPKKAPRAKSKTSTNRPRTIM*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
