Glyma08g08340 - SoyBase

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Report for Sequence Feature Glyma08g08340

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5992220
stop:	5996320
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30650	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 14 \| chr1:10868612-10870973 FORWARD LENGTH=430	SoyBase	E_val: 2.00E-77	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G3FF80	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor 14-1 (Fragment) n=1 Tax=Dimocarpus longan RepID=G3FF80_9ROSI	SoyBase	E_val: 2.00E-108	ISS
UniRef100_I1KR98	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KR98_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma08g08340

Locus	Gene Symbol	Protein Name
	WRKY113	WRKY Transcription Factor

Expression Patterns of Glyma08g08340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08340

Paralog	Evidence	Comments
Glyma05g25331	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g078700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g08340

Limit To All Plant Sequences

>Glyma08g08340.1   sequence type=CDS   gene model=Glyma08g08340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCAATATCCTTGGCACAATTATGGAGAACTATCAAGGTGATTTAAGTGACATAATTCGTGCTAGTGGTGCATCATATGGCAGTTGCAGCACGGGAACTTCATCATCTGAAGCTGCTAATCCCTTCTCTCGTAATTATCACTTGCAGTTCTCTTCTGATCCCATGATTTTCTCTTCTGTTTTGGAAGGGTTTAATAGCAACTTTGGTGATCCATTTTCAAACATGAGAGATCCCTTTCTACACGAGCTTGATTTGCCTCTCTCTGCCTATTTTAATAGCACAAGTTCATCTGCAGAAATTAAGAGTTCTGGGGCATTGGAAGAAGCAACTTGTTTTGGTGGTGGGGTTGTTGCTGGTAGTAGTAGTAGTAGTAATAGTTGTGTTTTGGCACAGAAGATTCTTGATGAGGATGATATGAGAAGGCCATGTAACAGCATATTGTCAAACATGATTCAGATCTCTCCCAATGATAAGTTACCCATCTCGCCAGTGGTGGATTCTTTGTCAAGGCCATTCAAGCCTTCTGGTGCGGTTTCAGGTCACAACATGATTGATGCAAAGACCTCTTCAGATTATTGCTTGGTGGACAACACAAAAGTGCAGATCTCATCTCCAAGGAATCCAGGTCTTAAGAGAAGAAAGAGCCTGGCAAAGAAGTCGATTTGTGTTCCTGCACCAGCTGCACCAAACAGCAGACAAAGTGGCGAGGTAGTTCCTTCTGATCTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCTCCATATCCAAGGGGTTACTATAGATGCAGCAGCTCAAAGGGTTGTCCTGCAAGGAAACAAGTTGAGAGGAGCAGAACAGACCCTAACATGTTGGTCATTACTTACACGTCAGAGCACAACCATCCATGGCCAACACACAGAAATGCTCTCGCTGGTTCATCTCGATCCCAACCATCAAAAAACAACAACATTGCTGCTTCAAAGAATGAGGAAGAAGAGGAGGAGGAGAGCAATAGTGACAGCAATAAAGTAAATAACAATGTCTTTGTGAGGGAGGAAGAGAAGCAGCTTGAGATGGATGATGTAGAATTCTGTGATATTGGAGTCCCTTATTACAGGCCAATATCTAAGATGAATAACTACCTACAACTTGATCAGGGCTTGTTTGCAGAATTTGGAGAAATAGAAAAGGATCAGTCAGTAAACCTATTGTCTCCACCACAAGGTTTTGATGATCAGCAAAGGGAATCCAACGCTTTAGATTCATTCCATTTCTTTGACTGGAGAGGTGATATTTAA

Predicted protein sequences of Glyma08g08340

Limit To All Plant Sequences

>Glyma08g08340.1   sequence type=predicted peptide   gene model=Glyma08g08340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCNILGTIMENYQGDLSDIIRASGASYGSCSTGTSSSEAANPFSRNYHLQFSSDPMIFSSVLEGFNSNFGDPFSNMRDPFLHELDLPLSAYFNSTSSSAEIKSSGALEEATCFGGGVVAGSSSSSNSCVLAQKILDEDDMRRPCNSILSNMIQISPNDKLPISPVVDSLSRPFKPSGAVSGHNMIDAKTSSDYCLVDNTKVQISSPRNPGLKRRKSLAKKSICVPAPAAPNSRQSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRTDPNMLVITYTSEHNHPWPTHRNALAGSSRSQPSKNNNIAASKNEEEEEEESNSDSNKVNNNVFVREEEKQLEMDDVEFCDIGVPYYRPISKMNNYLQLDQGLFAEFGEIEKDQSVNLLSPPQGFDDQQRESNALDSFHFFDWRGDI*

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