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Report for Sequence Feature Glyma08g08340

Feature Type:gene_model
Chromosome:Gm08
Start:5992220
stop:5996320
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G30650AT Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 14 | chr1:10868612-10870973 FORWARD LENGTH=430 SoyBaseE_val: 2.00E-77ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_G3FF80UniRef Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor 14-1 (Fragment) n=1 Tax=Dimocarpus longan RepID=G3FF80_9ROSI SoyBaseE_val: 2.00E-108ISS
UniRef100_I1KR98UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KR98_SOYBN SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
WRKY113 WRKY Transcription Factor

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g25331 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g078700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g08340.1   sequence type=CDS   gene model=Glyma08g08340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCAATATCCTTGGCACAATTATGGAGAACTATCAAGGTGATTTAAGTGACATAATTCGTGCTAGTGGTGCATCATATGGCAGTTGCAGCACGGGAACTTCATCATCTGAAGCTGCTAATCCCTTCTCTCGTAATTATCACTTGCAGTTCTCTTCTGATCCCATGATTTTCTCTTCTGTTTTGGAAGGGTTTAATAGCAACTTTGGTGATCCATTTTCAAACATGAGAGATCCCTTTCTACACGAGCTTGATTTGCCTCTCTCTGCCTATTTTAATAGCACAAGTTCATCTGCAGAAATTAAGAGTTCTGGGGCATTGGAAGAAGCAACTTGTTTTGGTGGTGGGGTTGTTGCTGGTAGTAGTAGTAGTAGTAATAGTTGTGTTTTGGCACAGAAGATTCTTGATGAGGATGATATGAGAAGGCCATGTAACAGCATATTGTCAAACATGATTCAGATCTCTCCCAATGATAAGTTACCCATCTCGCCAGTGGTGGATTCTTTGTCAAGGCCATTCAAGCCTTCTGGTGCGGTTTCAGGTCACAACATGATTGATGCAAAGACCTCTTCAGATTATTGCTTGGTGGACAACACAAAAGTGCAGATCTCATCTCCAAGGAATCCAGGTCTTAAGAGAAGAAAGAGCCTGGCAAAGAAGTCGATTTGTGTTCCTGCACCAGCTGCACCAAACAGCAGACAAAGTGGCGAGGTAGTTCCTTCTGATCTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCTCCATATCCAAGGGGTTACTATAGATGCAGCAGCTCAAAGGGTTGTCCTGCAAGGAAACAAGTTGAGAGGAGCAGAACAGACCCTAACATGTTGGTCATTACTTACACGTCAGAGCACAACCATCCATGGCCAACACACAGAAATGCTCTCGCTGGTTCATCTCGATCCCAACCATCAAAAAACAACAACATTGCTGCTTCAAAGAATGAGGAAGAAGAGGAGGAGGAGAGCAATAGTGACAGCAATAAAGTAAATAACAATGTCTTTGTGAGGGAGGAAGAGAAGCAGCTTGAGATGGATGATGTAGAATTCTGTGATATTGGAGTCCCTTATTACAGGCCAATATCTAAGATGAATAACTACCTACAACTTGATCAGGGCTTGTTTGCAGAATTTGGAGAAATAGAAAAGGATCAGTCAGTAAACCTATTGTCTCCACCACAAGGTTTTGATGATCAGCAAAGGGAATCCAACGCTTTAGATTCATTCCATTTCTTTGACTGGAGAGGTGATATTTAA

>Glyma08g08340.1   sequence type=predicted peptide   gene model=Glyma08g08340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCNILGTIMENYQGDLSDIIRASGASYGSCSTGTSSSEAANPFSRNYHLQFSSDPMIFSSVLEGFNSNFGDPFSNMRDPFLHELDLPLSAYFNSTSSSAEIKSSGALEEATCFGGGVVAGSSSSSNSCVLAQKILDEDDMRRPCNSILSNMIQISPNDKLPISPVVDSLSRPFKPSGAVSGHNMIDAKTSSDYCLVDNTKVQISSPRNPGLKRRKSLAKKSICVPAPAAPNSRQSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRTDPNMLVITYTSEHNHPWPTHRNALAGSSRSQPSKNNNIAASKNEEEEEEESNSDSNKVNNNVFVREEEKQLEMDDVEFCDIGVPYYRPISKMNNYLQLDQGLFAEFGEIEKDQSVNLLSPPQGFDDQQRESNALDSFHFFDWRGDI*







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