Glyma08g08330 - SoyBase

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Report for Sequence Feature Glyma08g08330

Feature Type:	gene_model
Chromosome:	Gm08
Start:	5979663
stop:	5984583
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g08330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48750	AT	Annotation by Michelle Graham. TAIR10: cell division control 2 \| chr3:18072238-18074296 FORWARD LENGTH=294	SoyBase	E_val: 0	ISS
GO:0000278	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle	SoyBase	N/A	ISS
GO:0000910	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis	SoyBase	N/A	ISS
GO:0006995	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0008356	GO-bp	Annotation by Michelle Graham. GO Biological Process: asymmetric cell division	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0010440	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression	SoyBase	N/A	ISS
GO:0040020	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meiosis	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0045736	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0048229	GO-bp	Annotation by Michelle Graham. GO Biological Process: gametophyte development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009574	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: preprophase band	SoyBase	N/A	ISS
GO:0010005	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cortical microtubule, transverse to long axis	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004693	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0594	KOG	Protein kinase PCTAIRE and related kinases	JGI		ISS
PTHR24056	Panther	CELL DIVISION PROTEIN KINASE	JGI		ISS
PTHR24056:SF109	Panther	SHAGGY-RELATED PROTEIN KINASE	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_A8VFL5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CDC2 n=1 Tax=Glycine max RepID=A8VFL5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KR96	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KR96_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g08330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g08330 not represented in the dataset	Glyma08g08330 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g08330

Paralog	Evidence	Comments
Glyma05g25320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g08330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g078600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g08330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g08330

Limit To All Plant Sequences

>Glyma08g08330.2   sequence type=transcript   gene model=Glyma08g08330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATACTGAGAATATGGATGTGAGGAAGCGCGTACAGTAAGAGACTAAGAGGTAACAGTCTCTCGCCAGAAAGGAGGCAGAGACCGAGAGAGCAACTGCACGCACTGTAACTCTCTCACCGTTTCTTCCGCTTTGATGGAACAGGTTGGTAAAACGCATGCGTTTTGAAGCTTCCATTCCATTTCAGTTTCGATTTTCGATTCTTTTCCCTCTACTCTGCAGTACGAGAAGGTTGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGGGTCGCGACCGCTCCACCAACGAGACCATCGCCTTGAAGAAGATTCGCTTGGAGCAGGAGGATGAGGGGGTTCCCAGCACCGCCATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAGGTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTACCTTGACTTAGATCTAAAGAAGCACATGGATTCATCTCCAGAATTTGCAAAAGATCCACGACAACTAAAAATGTTCCTGTACCAAATTCTCTGTGGCATCGCTTACTGTCATTCACGTAGAGTTCTTCATCGAGACTTAAAACCACAGAATTTGTTGATAGATCGCAGCAATAATGCACTAAAACTTGCAGATTTTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGGTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCATTATTCTACCCCAGTTGATATTTGGTCAGTGGGATGCATATTTGCAGAGATGGTAAATCAACGACCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGGACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTTTCTAGCATGCTTTACTTGGATCCCAGCAAAAGAATTACTGCTAGGAGCGCTCTTGAGCATGAATACTTCAAAGACATTAAATTTGTACCCTGATTTCTTATCTTCAAGGCTGAGGTGTCTATATTAGTATGTGTAGCATTTATGGGTTTTGACTCAAACGTGTGTTGTCCTTGCTTTTTTCTTCAATGCTTTGTACCGAATCATATTTCATTTATTTGTTCTTACATTTTTATTTTAGTATGTGTGATCTTGTTACCTATTACCCGTTTAATGTTTTAGTTTCGATGCAATGCAACAAGGAATTCAGTTTGCTTGATGTGTTTGTACATACTTAATGCTGAATGTTGCTTGTAAAAGTAAAATTAGGTACTTATTTGCACGGGGCATGTAAAATTGGCTTCCGTTCTTTTCTGTAAACTGCTTTTATCTGCTTTCTCAAATTGGTATCAGGACATAAGTTCA

Coding sequences of Glyma08g08330

Limit To All Plant Sequences

>Glyma08g08330.1   sequence type=CDS   gene model=Glyma08g08330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAGTACGAGAAGGTTGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGGGTCGCGACCGCTCCACCAACGAGACCATCGCCTTGAAGAAGATTCGCTTGGAGCAGGAGGATGAGGGGGTTCCCAGCACCGCCATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAGGTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTACCTTGACTTAGATCTAAAGAAGCACATGGATTCATCTCCAGAATTTGCAAAAGATCCACGACAACTAAAAATGTTCCTGTACCAAATTCTCTGTGGCATCGCTTACTGTCATTCACGTAGAGTTCTTCATCGAGACTTAAAACCACAGAATTTGTTGATAGATCGCAGCAATAATGCACTAAAACTTGCAGATTTTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGGTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCATTATTCTACCCCAGTTGATATTTGGTCAGTGGGATGCATATTTGCAGAGATGGTAAATCAACGACCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGGACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTTTCTAGCATGCTTTACTTGGATCCCAGCAAAAGAATTACTGCTAGGAGCGCTCTTGAGCATGAATACTTCAAAGACATTAAATTTGTACCCTGA

>Glyma08g08330.2   sequence type=CDS   gene model=Glyma08g08330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCACAGGAACATTGTTAGGTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTACCTTGACTTAGATCTAAAGAAGCACATGGATTCATCTCCAGAATTTGCAAAAGATCCACGACAACTAAAAATGTTCCTGTACCAAATTCTCTGTGGCATCGCTTACTGTCATTCACGTAGAGTTCTTCATCGAGACTTAAAACCACAGAATTTGTTGATAGATCGCAGCAATAATGCACTAAAACTTGCAGATTTTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGGTGGTAACACTGTGGTACAGAGCTCCAGAAATTTTGCTTGGATCCCATCATTATTCTACCCCAGTTGATATTTGGTCAGTGGGATGCATATTTGCAGAGATGGTAAATCAACGACCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACATCATTGCCTGATTTTAAATCAGCCTTCCCCAAATGGCAGCCTAAGGACCTGAAAATTGTGGTTCCAAATCTCAAGCCAGCTGGTCTTGATCTTCTTTCTAGCATGCTTTACTTGGATCCCAGCAAAAGAATTACTGCTAGGAGCGCTCTTGAGCATGAATACTTCAAAGACATTAAATTTGTACCCTGA

Predicted protein sequences of Glyma08g08330

Limit To All Plant Sequences

>Glyma08g08330.1   sequence type=predicted peptide   gene model=Glyma08g08330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQYEKVEKIGEGTYGVVYKGRDRSTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHDEKSLYLVFEYLDLDLKKHMDSSPEFAKDPRQLKMFLYQILCGIAYCHSRRVLHRDLKPQNLLIDRSNNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSHHYSTPVDIWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRIMGTPNEDTWPGVTSLPDFKSAFPKWQPKDLKIVVPNLKPAGLDLLSSMLYLDPSKRITARSALEHEYFKDIKFVP*

>Glyma08g08330.2   sequence type=predicted peptide   gene model=Glyma08g08330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQHRNIVRLQDVVHDEKSLYLVFEYLDLDLKKHMDSSPEFAKDPRQLKMFLYQILCGIAYCHSRRVLHRDLKPQNLLIDRSNNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSHHYSTPVDIWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRIMGTPNEDTWPGVTSLPDFKSAFPKWQPKDLKIVVPNLKPAGLDLLSSMLYLDPSKRITARSALEHEYFKDIKFVP*

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