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Report for Sequence Feature Glyma08g08270

Feature Type:gene_model
Chromosome:Gm08
Start:5912971
stop:5918690
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g08270
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G01080AT Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:78038-79176 FORWARD LENGTH=231 SoyBaseE_val: 7.00E-53ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_Q9SJV8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9SJV8_ARATH SoyBaseE_val: 3.00E-50ISS
UniRef100_UPI0002339128UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339128 related cluster n=1 Tax=unknown RepID=UPI0002339128 SoyBaseE_val: 1.00E-162ISS

Expression Patterns of Glyma08g08270
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g08270 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g077900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g08270
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g08270
>Glyma08g08270.2   sequence type=CDS   gene model=Glyma08g08270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACACAAGAGCGGGAGCTAACTCAGAATCCCAGCCACAGCCATCAAGACGACAACAGCACCTCCACTACGCCAGCTCCCCAACGACGTCGTCTCATTCTTCATGCTGCTGCTGCCTCTTCCTCCTCTTCTCCTTCTTCGCTCTCTTAGTCCTCGCCGCGCTTCTCGTAATCGTGCTCGCCATCAAGCCCAAAAGCCCGCACCTGGACCTCCGCCAAGTGGGCCTCCAGTACATGGCCCTCGTGCCCAACCCAACTCGCCCAGGCCCATCGACCGCGAAGCTCTACCTCGTGATCCGGTTGGTGCTGGCGGTGGTGAACCCGAACGAGGTGGGGATCAGGTGCGGCGAGTCCAGAGTCACGGTCGTGTACCGGGACACACCCTTGGGCAGGACCTCCCTGCCCGCGTTCTGCCAGCGCGCTCACACCGTGAAGGAGGTGGTGGCCACCATGGCAGTGGATGACGTTAACTTGTCCAACGCCGATGGTGCTGACTTCGCCAGAGACGCGTTGCTCAATGACAGGGTCGAGCTGAGGGTGTTGGCCCATGTCGCCACCAAGATTCGCCTCTTCAACCTACCATCTCCTCCACTTCAGGTCTCAGTGAATTGTGTAATAGTGATAAGTCCAAGAAAGCAATCTCTAACTTACAAGCAGTGTGGATTCGAGGGATTGAATTAA
Predicted protein sequences of Glyma08g08270
>Glyma08g08270.2   sequence type=predicted peptide   gene model=Glyma08g08270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTRAGANSESQPQPSRRQQHLHYASSPTTSSHSSCCCCLFLLFSFFALLVLAALLVIVLAIKPKSPHLDLRQVGLQYMALVPNPTRPGPSTAKLYLVIRLVLAVVNPNEVGIRCGESRVTVVYRDTPLGRTSLPAFCQRAHTVKEVVATMAVDDVNLSNADGADFARDALLNDRVELRVLAHVATKIRLFNLPSPPLQVSVNCVIVISPRKQSLTYKQCGFEGLN*






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